Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02295 ATGTGCATCGCCGAGGAAGGTGAAGAAGCCAAACGGGGCTCCAGGAAGCGCGGGCGTGAGCCAGAATCAGCATTCCGCGGAGTCCGTAAACGAAGCTGGGGACGCTACGTGTCCGAGATAAGGCTCCCGGGCCAGAAAACCCGAATATGGCTTGGCTCGTTCGGCTCGGCTGAGATGGCGGCTCGCGCTTACGACTCGGCGGCTTTCTTCTTGAAAGGAGCCTCTGCCACCCTTAATTTCCCGGAGCTGGCACACTCCCTGCCTCGCCCTCTGTCCTCTTCCCGGATAGACATACAATCCGCCGCCGCCAAAGCCGCTCTCCACTCTCCGCCCCCCAAAACGGAAACGGAGACTGAGACTGATCAGTGGTGGGACCATTTGATTTTGGGAGAAGAAGAATCCATTACGACGTCGACGTTTGAGGATGTCAAGGAAGCTCCTCTTATGAGCCCCCTTAGGGTGGACTCCACTTTCGGAGATTTCTCATGGAACGAACTCTTGGATTTCAATGATGACAGCATTCTCATCATGGAATCACCATCCACCACTCTTGTCTAG 558 0.5573 MCIAEEGEEAKRGSRKRGREPESAFRGVRKRSWGRYVSEIRLPGQKTRIWLGSFGSAEMAARAYDSAAFFLKGASATLNFPELAHSLPRPLSSSRIDIQSAAAKAALHSPPPKTETETETDQWWDHLILGEEESITTSTFEDVKEAPLMSPLRVDSTFGDFSWNELLDFNDDSILIMESPSTTLV 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02295 185 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 118 - -
Pumo11g02295 185 Gene3D AP2/ERF domain 24 82 IPR036955 GO:0003700|GO:0006355
Pumo11g02295 185 CDD AP2 23 83 IPR001471 GO:0003700|GO:0006355
Pumo11g02295 185 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Pumo11g02295 185 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Pumo11g02295 185 FunFam Ethylene-responsive transcription factor 2 23 82 - -
Pumo11g02295 185 SUPERFAMILY DNA-binding domain 23 82 IPR016177 GO:0003677
Pumo11g02295 185 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Pumo11g02295 185 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Pumo11g02295 185 MobiDBLite consensus disorder prediction 1 24 - -
Pumo11g02295 185 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02295 Pumo-Chr11 55546129 55546882 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g02295 4 110 AP2-EREBP Transcription Factor Family AT5G11590 56.075 1.98e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo11g02295 AP2 3.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02295 K09286 - gmx:100783790 231.876