Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02293 ATGGCTTCTTCTAATGGTGGTGTGCCGCCAGGATTTAGATTTCATCCAACGGATGAAGAGCTGCTTCATTACTACTTGAAGAAGAAGGTGTCCTTTCAGAAGTTTGACATGGATGTTATTAGAGAGGTCGACTTGAACAAGATGGAGCCTTGGGACTTGCAAGAAAGATGTAGAATTGGATCTACTCCACAAAACGAGTGGTATTTCTTCAGTCACAAGGATAGAAAGTACCCTACAGGTTCAAGGACTAATAGAGCAACGAATGCAGGGTTTTGGAAAGCAACAGGAAGAGACAAGTGCATTAGGAATAGCTTCAAGAAGATTGGAATGAGGAAAACCCTTGTGTTTTACAAAGGAAGAGCTCCTCATGGACAAAAGACTGATTGGATCATGCATGAGTACCGCCTAGAAGAAGGCAATGATCCTCAAGGAGGTGCCAATGAAGATGGGTGGGTGGTGTGCAGAGTGTTCAAGAAGAAGAATTTATTCAAGATTGGAAATGAAGGTGGCTCTACACATAATCCAGATCAACAAATGAACAATTCCTCAAGCACTAATGCACGCTCCTATAGAGAAAATCATTACTTACTACATCAACAGCAAAATCCTAGGAACTCATCAGGGCTTGAGCTTGATAAGCCTGAGCTGGCTCTCCATTACCCACACTTGCAAAACCCTCAATACTCACTCTTCCAATCCCAAGCTCTTCTTCAGAGTCAGACCCAAAAGCCTATGGTTTATGATTATTCATCATATACATCATCTCTACCATCAGAAACCCCTATCATGGCAAAGCAACTAATGACAAACCCTAGAGACTGTGAGAGCGGCAGTGAGGGCCTAAGATATCAAGTTTCGGAGTCTGGTATGGAAGTTGGATCGTGTGAACCAAATCAAGATCAAATGGGAGGCGGAAGAGGTGAAGGAATAAACGAATGGGGTGTTCTTGACAGGCTAGTCACCTCTCATCTTGGAAATGATCAGGACTCATCCAAAGGGGTCAGGTTTGAGGAGCCAAATCCACAGTCTGTCCACCAGATCAACCAACTTTCATTACGGGGAGAGATGGACTTCTGGGCCTATGGAAAACAATGA 1095 0.4365 MASSNGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMDVIREVDLNKMEPWDLQERCRIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSFKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLEEGNDPQGGANEDGWVVCRVFKKKNLFKIGNEGGSTHNPDQQMNNSSSTNARSYRENHYLLHQQQNPRNSSGLELDKPELALHYPHLQNPQYSLFQSQALLQSQTQKPMVYDYSSYTSSLPSETPIMAKQLMTNPRDCESGSEGLRYQVSESGMEVGSCEPNQDQMGGGRGEGINEWGVLDRLVTSHLGNDQDSSKGVRFEEPNPQSVHQINQLSLRGEMDFWAYGKQ 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02293 364 SUPERFAMILY NAC domain 7 159 IPR036093 GO:0003677|GO:0006355
Pumo11g02293 364 MobiDBLite consensus disorder prediction 166 187 - -
Pumo11g02293 364 Gene3D NAC domain 17 164 IPR036093 GO:0003677|GO:0006355
Pumo11g02293 364 Pfam No apical meristem (NAM) protein 9 136 IPR003441 GO:0003677|GO:0006355
Pumo11g02293 364 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 234 - -
Pumo11g02293 364 MobiDBLite consensus disorder prediction 167 187 - -
Pumo11g02293 364 FunFam NAC domain-containing protein 17 163 - -
Pumo11g02293 364 ProSiteProfiles NAC domain profile. 8 159 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02293 Pumo-Chr11 55527606 55530273 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g02293 1 358 NAC Transcription Factor Family AT1G33280 53.719 4.47e-121 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo11g02293 NAM 3.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02293 - - gmx:100804181 677.552