Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02292 ATGGTGGTCAACGAGAGACCCTCCAAGAGGATGAAGAGGAGGGTCACAGCTGATCTCTGTGATTTTCTTACTTTTCCGGCGGCCGGCGTTCCCGCCTCCGGCGAACCCTTCCGGAACTGTGTCCAGCGCTTCCTCTCTGACCATGCGCGCATCACTTTCCCTCCCTCGCTCTTTCCGTCACTCATGACGTGGCAGATCTTGTTCCGTGTCGGAGACATCGTCGACGGACCCGATCTCTCGCCGGCGATGGTCACTCTCGACATTGTCGAGGAGGACGTCACTCGTTCTCGTAGTTCAGTCTATTGTGACCAGTGCCGAGTCGTTGGGTGGAGTGGGCATCCGGTGTGTCGAAAGCGATACCATTTCATAATAAGGGCTGCGAGTGATGCCGAAGCATATCAAAGACCTTGTTCAAGATGTGGAAATCTTCTCCAATTATCTGAAACAAGGTGTAGATCGTGTAACTTTGCCATCACCGTTGATGACCTTGAGGATTGGGTGTATCTTCAGATTGAAGATAACACCCATCTTCTGCATGGTGTCGTCCATGCCAATGGTTATGGTCACCTGCTTACTCTTAATGGAAGAGAAGGTGGCTCGAAGCTTCTCTTTGGATCTGATATCATGAATTTCTGGGATAGGCTATGTGCTGCAATTTCTGTTAGGAAGGTTAGCGTGATGGATTTGTCCAAGAAATTTGGGCTGGAATACCGATTGCTTCATGCAATCACCAACGAACATTCCTGGTATGGCAATTGGGGTTATGAATTTGGAACTGGCAGCTATGCCCTAACCCAAGATGCATACAAGAATGCAGTGAATACCCTGTCAAGCATGCCCATGTCCTCATTTTCATTCCATGGTCGGGGACCAAGAAGCCGCCTGGAGTGTGTCATTTCTCTTTACCAGTCTTTGGCAGAAACTGAACTTTTGACGATCAAAGATCTCTTCTCCTTTTTGTTGACGTTGATTCATGAATGTCGAAAGCCAATGGCCATGAGGACATCTAAGCAAACCAGTAATTTATTGTGTGCTTGGACGGGAAATGATGTTGAAGAGGTGCAACATGCTTTGATCAAGGTATTGCTTGCATCGGGTGCCTGTACTGAGGCCAAATGGGTGACAAGGCGTGCTCTCAAGGGTGCAGTATGCAGGGGTGTTTCATCTCCAGAGCTTCTAGACTACTGTCTTAAGCACTTGCCAGGGAAATTAGCTGCCAATGGAATGATAGTTTGTTCACGATGCAACCCCATTTCCAGTGCCATCGAATTCAGGTTAGAACCTTGGTGTAATGGATTAAGCACAAATTCAAGCTATCCAACAGAAGTTCAACTGATCTCTGATTTGACATTCTTATTTTATTCAATTATTCATCCTGAAAAAATGGTGTGCTACAGACCTAAGATTATGCGGAAAAGGGTGGCTGATTCAGCCAGGAAGCTCCTTGACTGTAAACAGTTTATGAAGGATTACAAGCCATATGAAATGGCCGTTGAACTGCCTTCAGTCATTAGGCTGTGGTGTCATGTGGAGCTTTCTGATCAGCCTAAGGATGATCCATCCCCACCGCCAGAGCTAATTGTGCTGCCTTTGAATGCCACCGTTGCTGACCTTAAGAACGAAGCCACTAGTGCTTTTCAAGAGGTGTATGCAATGTACAAGAGGTTTCAAGCTGAGGAACTCCTAGGATACGGGTCAATCAGTGATTCGCTCACCATAAAGTTCTTGCTTGGAACAAGTGGATCAATCCAAATTCAAGGTAAATGTCCAGCTAAACATGGGCTAAGCCGATTCCGAATGGAACGAGGAACAGAGGTGTGGAAGGTGGATTGCACCTGCGGGGCTAGGGATGATGATGGAGAGAAAATGTTAGCATGTGATACCTGTGGCGTTTGGCAGCATACCAGATGTGCTGGAGTTGATAATACTGATGGAATGTCTTCTAAGTTTGTTTGTATGAGATGTGTCAACTTGTACCGTGAGGAAACTAAAAAATTACCAGCACCTGGTGAGGAAGCTAACGAGACCTGTAAATTCAACACATCTTGCAGAGATGAGGCAGTAGCAAGGGACTGTGCAACAGTTTCATCATGTAACATAGCTGTGAATTTTGGTGTACGTTGA 2124 0.4647 MVVNERPSKRMKRRVTADLCDFLTFPAAGVPASGEPFRNCVQRFLSDHARITFPPSLFPSLMTWQILFRVGDIVDGPDLSPAMVTLDIVEEDVTRSRSSVYCDQCRVVGWSGHPVCRKRYHFIIRAASDAEAYQRPCSRCGNLLQLSETRCRSCNFAITVDDLEDWVYLQIEDNTHLLHGVVHANGYGHLLTLNGREGGSKLLFGSDIMNFWDRLCAAISVRKVSVMDLSKKFGLEYRLLHAITNEHSWYGNWGYEFGTGSYALTQDAYKNAVNTLSSMPMSSFSFHGRGPRSRLECVISLYQSLAETELLTIKDLFSFLLTLIHECRKPMAMRTSKQTSNLLCAWTGNDVEEVQHALIKVLLASGACTEAKWVTRRALKGAVCRGVSSPELLDYCLKHLPGKLAANGMIVCSRCNPISSAIEFRLEPWCNGLSTNSSYPTEVQLISDLTFLFYSIIHPEKMVCYRPKIMRKRVADSARKLLDCKQFMKDYKPYEMAVELPSVIRLWCHVELSDQPKDDPSPPPELIVLPLNATVADLKNEATSAFQEVYAMYKRFQAEELLGYGSISDSLTIKFLLGTSGSIQIQGKCPAKHGLSRFRMERGTEVWKVDCTCGARDDDGEKMLACDTCGVWQHTRCAGVDNTDGMSSKFVCMRCVNLYREETKKLPAPGEEANETCKFNTSCRDEAVARDCATVSSCNIAVNFGVR 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02292 707 CDD PHD_MMD1_like 610 655 - -
Pumo11g02292 707 ProSitePatterns Zinc finger PHD-type signature. 611 655 IPR019786 -
Pumo11g02292 707 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 665 - -
Pumo11g02292 707 Pfam PHD-finger 611 657 IPR019787 -
Pumo11g02292 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 596 660 IPR013083 -
Pumo11g02292 707 SUPERFAMILY FYVE/PHD zinc finger 600 657 IPR011011 -
Pumo11g02292 707 ProSitePatterns Uncharacterized protein family UPF0054 signature. 179 189 IPR020549 -
Pumo11g02292 707 SMART PHD_3 610 656 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02292 Pumo-Chr11 55514064 55517476 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g02292 7 655 PHD Transcription Factor Family AT5G22260 27.141 1.65e-83 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pumo11g02292 PHD 4.2e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02292 K26271 - gmx:100780558 1365.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g02292 11 55514064 55517476 Pumo11g02292 11 55514064 55517476 ECH