Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02288 ATGATCGGGCCCATTGCTTCCGTGGTCCCCCAACCCAACTCAACTGCTTCTGATACTCAAAGCCAAAGCCGAAGCCGAACTTTGTCAAATGCTCTGTTCCTTTTGATTCAGTTTTCATTCGACGAAACAAAAACAATGGCATATGCTGCAATGAAACCCACTAAGCCCGGCTTGGAGGAGCCTCAGGAGCAAATCCATAAGATTAGGATCACCCTTTCCTCTAAGAACTTTGTGCCGACCAAGGACAAGCATCTCAGGGTGAAGGGACCTGTTAGGATGCCAACTAAAGTTCTTCACATCACCACCAGGAAATCACCATGTGGTGAAGGCACCAACACATGGGACAGATTTGAGCTGCGTGTGCACAAGAGAGTCATTGACCTCTACAGTTCCCCTGATGTGGTTAAGCAGATTACCTCAATCACAATTGAACCTGGTGTCGAGGTTGAGGTCACCATTGCAGATGCTTGA 471 0.4777 MIGPIASVVPQPNSTASDTQSQSRSRTLSNALFLLIQFSFDETKTMAYAAMKPTKPGLEEPQEQIHKIRITLSSKNFVPTKDKHLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02288 156 SUPERFAMILY Ribosomal protein S10 67 153 IPR036838 -
Pumo11g02288 156 NCBIfam 30S ribosomal protein S10 81 153 IPR005729 GO:0003735|GO:0006412|GO:0015935
Pumo11g02288 156 PRINTS Ribosomal protein S10 family signature 113 127 IPR001848 GO:0003735|GO:0005840|GO:0006412
Pumo11g02288 156 PRINTS Ribosomal protein S10 family signature 91 106 IPR001848 GO:0003735|GO:0005840|GO:0006412
Pumo11g02288 156 PRINTS Ribosomal protein S10 family signature 67 80 IPR001848 GO:0003735|GO:0005840|GO:0006412
Pumo11g02288 156 Gene3D Ribosomal protein S10 domain 48 156 IPR036838 -
Pumo11g02288 156 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 12 155 IPR001848 GO:0003735|GO:0005840|GO:0006412
Pumo11g02288 156 MobiDBLite consensus disorder prediction 1 23 - -
Pumo11g02288 156 Hamap 30S ribosomal protein S10 [rpsJ]. 54 153 IPR001848 GO:0003735|GO:0005840|GO:0006412
Pumo11g02288 156 SMART Ribosomal_S10_2 69 152 IPR027486 -
Pumo11g02288 156 MobiDBLite consensus disorder prediction 8 23 - -
Pumo11g02288 156 Pfam Ribosomal protein S10p/S20e 81 152 IPR027486 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02288 Pumo-Chr11 55492808 55493626 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g02288 46 156 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 79.508 4.99e-64 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02288 K02969 - sind:105160574 206.068