Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02272 ATGAATACTTTTACCCATGTACCCCCCGGTTTTAGGTTCCATCCTACGGATGAAGAACTTGTTGATTACTACCTTAGGAAGAAAGTTGCTTCAAGGAGGATTGACCTAGATGTCATTAAAGATGTTGACCTCTACAAAATTGAGCCATGGGATCTTCAAGAGATTTGCAGAATAGGAACAGAAGAACAAAATGAATGGTACTTCTTTAGCCATAAAGATAAGAAGTATCCAACTGGAACTCGCACAAATAGAGCAACTGCAGCAGGGTTTTGGAAAGCAACAGGAAGAGACAAGGCAATCTATTCCAAGCATGACCTGATAGGCATGAGGAAAACCTTAGTCTTTTATAAAGGTCGAGCTCCAAATGGACAAAAGTCAGATTGGATAATGCACGAGTATCGGCTTGAAACAGATGAAAATGGCACTCCACAGGAAGAAGGATGGGTTGTGTGTAGAGTATTCAAGAAGAGAGTAACAACGATGCGTAAAGTGAGTGAGCACGACTCCCCCTGCTGGTATGATGACCAAGTCTCTTTCATGCAAGACATGGACTCACCAAAGCAAACTTCTCAATCTAATTTGGTCTACAAGCACGGCATGCAGCTACCATATCCTTGCAAGAAAGAGCTAGATTTGCCGCCATACCAATTGCCTCGTGACCACTTTCTCCAGCTTCCACTTCTAGAGAGCCCAAAACTGCTTCAATCTGCTTCTGCAGGCATGGCAGCGCCAGCATATCTTCTAGACCACTCAACTACTCTGCTTCCCTCATCAGTACTCATACAAGAAGAACAGCTTGGTGTTGGTCAGCAAAACTTTCAGGCAACGTATGGCAGCAACAACAATTCCAATGAACAAGCAGTGGATCCAGTAACTGATTGGCGAGTGCTTGACAAGTTTGTTGCTTCACAACTTAGTCAAGATGCGTCCAAAGACAATACCTACTCAAACACCACAGCCAATATCTTTCACGGCACGGACAATGGCAACTGCAATGTACAGTTCAGACATTTGGACAAACAAGAGTTAGTGGTGCCTCAACAAAATGCCTCAACATCAAACTCCAGCTGTCCGATTGATTTGTGGAAATAG 1092 0.4359 MNTFTHVPPGFRFHPTDEELVDYYLRKKVASRRIDLDVIKDVDLYKIEPWDLQEICRIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGTPQEEGWVVCRVFKKRVTTMRKVSEHDSPCWYDDQVSFMQDMDSPKQTSQSNLVYKHGMQLPYPCKKELDLPPYQLPRDHFLQLPLLESPKLLQSASAGMAAPAYLLDHSTTLLPSSVLIQEEQLGVGQQNFQATYGSNNNSNEQAVDPVTDWRVLDKFVASQLSQDASKDNTYSNTTANIFHGTDNGNCNVQFRHLDKQELVVPQQNASTSNSSCPIDLWK 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02272 363 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
Pumo11g02272 363 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 280 - -
Pumo11g02272 363 FunFam NAC domain-containing protein 16 160 - -
Pumo11g02272 363 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Pumo11g02272 363 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Pumo11g02272 363 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02272 Pumo-Chr11 55298250 55302638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g02272 1 363 NAC Transcription Factor Family AT1G12260 57.260 1.64e-137 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo11g02272 NAM 3.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02272 - - gmx:100815845 623.239