Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02271 ATGGCTCGCGGAAAGGTTCAGCTGAAGCGAATTGAGAACCCTGTGCACAGACAAGTTACTTTCTGCAAGCGCCGAGCTGGACTTCTTAAGAAGGCTAAGGAACTCTCTGTGCTGTGCGATGCTGAAATTGGTCTTTTCATTTTCTCCGCCCATGGAAAGCTCTATGAACTAGCTACCAAAGGAACCATGCAAGGGCTTATTGAGAGGTACATGAAGTTCACACGAGGGGCTCAGCCTGAAGCAGCATCTGATCAAGCACTTCTTCTGGATGCAAAAGAGGAAACTAACGTGCTAAAACAAGAAATCCAAACATTGCAAAAGGGTATCAGGTATTTGTTTGGAGGAGGAAATAAGACTATGACAATTGATGAATTACAAGTGCTAGAGAAGAATCTCGAAACTTGGACATATCATATTCGTTCAATGAAGATGAATATCATGTTACAAGAAATTCAAGCTTTGAAAGATAAGGAGGGAACACTTAAGGCGGCAAATAAACATCTCCATGATAAGATTCTGGAGAATACTGCAATTTCTAACTTTGCTCAATTTGCTACTGATACTTCGTACCCACTAATTATACAAGATGGGGTTTTTCAACTCTATTAA 609 0.4072 MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELATKGTMQGLIERYMKFTRGAQPEAASDQALLLDAKEETNVLKQEIQTLQKGIRYLFGGGNKTMTIDELQVLEKNLETWTYHIRSMKMNIMLQEIQALKDKEGTLKAANKHLHDKILENTAISNFAQFATDTSYPLIIQDGVFQLY 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02271 202 Gene3D - 15 77 IPR036879 GO:0003677|GO:0046983
Pumo11g02271 202 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Pumo11g02271 202 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo11g02271 202 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pumo11g02271 202 Coils Coil 88 108 - -
Pumo11g02271 202 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Pumo11g02271 202 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 148 - -
Pumo11g02271 202 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo11g02271 202 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo11g02271 202 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo11g02271 202 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo11g02271 202 Pfam K-box region 91 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo11g02271 202 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02271 Pumo-Chr11 55278724 55289501 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g02271 1 201 MADS-box Gene Family AT1G71692 60.664 7.37e-81 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pumo11g02271 K-box 5.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02271 - - gmx:100783345 370.163