Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02262 ATGGACGCCGTCGATTCAACCCCTCCCCTCCCTCCCTACGATCCATCTCCACAGAACCACGCGCCTCCTGAGTATCACAACCCGCCGCAGCATCAATCGGAAACCGGACTAGACGGTAACGGCACCAACGACGGAAAACCATCGGAGAACGGCCAGGGCGCCGCCGACCACAACGGTTTGCATCCTCAGATTTCCAAGCCATTGCTATCCGAAGGATTGACGCGGAGCGGCACCGACAGGGATCAATCCGGCGGCGAGGAGGAGACCACCAGCAAGCGCCGCCGCCGGAGCCGGTGGGACCCGCAGCCGGATTCGAATGACCAGAGCGGCGGCGATTCGGGGACCGGACCGAAGAAGAGGAAGTCTCGTTGGGCCGATGACGAGCCCAAGCCGGTGATTCAGCTTCCTGATTTCATGGGCGGTATTGAATTCGATCCTGAGATTCAGGCTTTGAATAGTAGGCTTCTTGAGATTAGTCGAATGTTACAGTCAGGTTTGCCCTTGGATGATCGCCCTGAAGGTGCTCGATCCCCTTCGCCTGAACCTATATATGATAACATGGGTATTAGGATTAACACTAGGGAATATCGTGCTCGTGAGAGATTGCAGAAGGAGAGGCAGGAAATTATATCTCAGATTATAAGGAAGAACCCTGCATTTAAGCCACCTGCGGATTATAGGCCGCCCAAGCTTCAGAAGAAGCTTTATATACCGATGAAGGAATACCCTGGTTACAATTTCATTGGGCTTATTATCGGTCCCAGAGGTAACACCCAGAAGCGGATGGAGAAAGAGACCGGTGCTAAAATTGTGATTCGAGGTAAAGGATCGGTGAAAGAGGGCAGGCTGCAACAGAAGAGGGATTTGAAACCTGACCCTTCGGAGAATGAAGATTTGCATGTGTTAGTGGAGGCTGAGACGCAGGAGTCGCTTGAGGCTGCTGCGGGTATGGTGGAGAAGCTCTTGCAGCCTGTGGATGAGGTATTGAATGAGCATAAGAGGCAACAGCTTAGGGAGCTTGCTGCGTTGAATGGGACGATCAGGGATGAGGAGTATTGCAGATTGTGTGGTGAGCCTGGTCATCGGCAATATGCGTGTCCTACTAGGACTTCAACGTTTAAGAGTGAAGTTGTGTGTAAGCATTGTGGGGATGGTGGTCATCCAAGCATAGATTGTCCGGTGAAGGGTGCTACTGGGAAGAAGATGGATGATGAGTATCAGAATTTCCTTGCAGAGTTGGGAGGTTCGGTTCCTGAATCTGCAACAAAGCAAACTGCTACATTGGCAATTGGTGCGGGCACTTCTGGAAGCAATCCTCCTTGGGCTAACAATTCTGGTACGGCTGGTGGTGCTCCTCAAGCTGGCTTAGGGGCTGCTGCAGTTAAAAAAGAAATAGATGATACAAATTTGTACATAGGGTATTTGCCGCCTACACTTGATGATGATGGCCTGATCCAATTATTTCAACAATTTGGTGAGATTGTTATGGCGAAAGTTATCAAGGACCGAATGTCAGGTTTAAGTAAAGGATACGGTTTTGTGAAGTATGCGGATATCACAATGGCAAACAATGCAATCTTGGCCATGAATGGTTATCGCCTTGAGGGACGAACAATTGCAGTGAGAGTTGCTGGTAAGCCTCCTCAGCCTGTTGTACCTCCTGGCCCACCGGCATCTGCTGTGCCCACTTATCCTGTTCCAAGCCAGCCTCTTGGTGCCTATCCATCCCAACAGTATGCTGCCGGTGGCCCCCTTGGGACTGCTCCTCCTGGGAGTTACGGTGGTACTCCAGTGCCATGGGGACCCCCTGTTCCTCCTCCATATGCTCCCTATGCTCCTCCTCCACCTGGGTCAACTATGTATCCACCTATGCAAGGTCAACCTATGCCTCCTTATGGGGTTCAATATCCTCCTCCTGTGCAGACTGGCCCTCCGGGTGCCCCATCGCAGCCTGCAACTTCTAGTGAAGTGCAGCAGAGTTACCCTCCTGGTGTGCAGTCTGACAATAGTACCTCAACTCAGTCTGTACCAGCAAATATGTATGGTAACTCGGTACCTTCGATGCCACCTGCAGCTCCACCTACATATCCTGCATCTTATGGATATCCACCTTACTATAATGCAGTTCCTCCACCACCTCCCCCTGCTGCCCCCATTCCTGTCTCAGCCCCAGACCAATCCCACAACATTGCAAATGTACCTTGGGCCAGTAATACTCTAGTTCCACCTCCTGCTTCATCGGCAGACAAGACAACATATGGTGCAGATCAATCCCAGAGCATTGGAAATGTGCCTAGGGCCACAAATCCACCAGTGCCTCCTCCTGCTTCATCAGCTGAGAAGACTTCATATGCTGCTGATTCGGAGTATGAGAAGTTCATGGCAGAGATGAAATGA 2397 0.5131 MDAVDSTPPLPPYDPSPQNHAPPEYHNPPQHQSETGLDGNGTNDGKPSENGQGAADHNGLHPQISKPLLSEGLTRSGTDRDQSGGEEETTSKRRRRSRWDPQPDSNDQSGGDSGTGPKKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIRKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGSVPESATKQTATLAIGAGTSGSNPPWANNSGTAGGAPQAGLGAAAVKKEIDDTNLYIGYLPPTLDDDGLIQLFQQFGEIVMAKVIKDRMSGLSKGYGFVKYADITMANNAILAMNGYRLEGRTIAVRVAGKPPQPVVPPGPPASAVPTYPVPSQPLGAYPSQQYAAGGPLGTAPPGSYGGTPVPWGPPVPPPYAPYAPPPPGSTMYPPMQGQPMPPYGVQYPPPVQTGPPGAPSQPATSSEVQQSYPPGVQSDNSTSTQSVPANMYGNSVPSMPPAAPPTYPASYGYPPYYNAVPPPPPPAAPIPVSAPDQSHNIANVPWASNTLVPPPASSADKTTYGADQSQSIGNVPRATNPPVPPPASSAEKTSYAADSEYEKFMAEMK 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02262 798 FunFam splicing factor 1 351 404 - -
Pumo11g02262 798 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 468 546 IPR000504 GO:0003723
Pumo11g02262 798 ProSiteProfiles Zinc finger CCHC-type profile. 379 393 IPR001878 GO:0003676|GO:0008270
Pumo11g02262 798 MobiDBLite consensus disorder prediction 114 130 - -
Pumo11g02262 798 ProSiteProfiles Type-1 KH domain profile. 246 318 - -
Pumo11g02262 798 FunFam splicing factor-like protein 1 448 550 - -
Pumo11g02262 798 MobiDBLite consensus disorder prediction 619 682 - -
Pumo11g02262 798 MobiDBLite consensus disorder prediction 165 186 - -
Pumo11g02262 798 SMART c2hcfinal6 352 368 IPR001878 GO:0003676|GO:0008270
Pumo11g02262 798 SMART c2hcfinal6 378 394 IPR001878 GO:0003676|GO:0008270
Pumo11g02262 798 MobiDBLite consensus disorder prediction 276 297 - -
Pumo11g02262 798 SMART kh_6 231 323 IPR004087 GO:0003676
Pumo11g02262 798 Pfam Splicing factor 1 helix-hairpin domain 120 227 IPR032570 -
Pumo11g02262 798 SUPERFAMILY Retrovirus zinc finger-like domains 349 395 IPR036875 GO:0003676|GO:0008270
Pumo11g02262 798 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 231 357 IPR036612 GO:0003723
Pumo11g02262 798 Gene3D - 145 222 IPR047086 -
Pumo11g02262 798 MobiDBLite consensus disorder prediction 573 594 - -
Pumo11g02262 798 Gene3D - 352 404 - -
Pumo11g02262 798 MobiDBLite consensus disorder prediction 735 787 - -
Pumo11g02262 798 Gene3D - 442 550 IPR012677 -
Pumo11g02262 798 PANTHER RNA-BINDING PROTEIN RELATED 81 590 IPR045071 -
Pumo11g02262 798 Gene3D K Homology domain, type 1 223 351 IPR036612 GO:0003723
Pumo11g02262 798 MobiDBLite consensus disorder prediction 1 134 - -
Pumo11g02262 798 MobiDBLite consensus disorder prediction 619 646 - -
Pumo11g02262 798 ProSiteProfiles Zinc finger CCHC-type profile. 353 367 IPR001878 GO:0003676|GO:0008270
Pumo11g02262 798 MobiDBLite consensus disorder prediction 80 102 - -
Pumo11g02262 798 MobiDBLite consensus disorder prediction 735 766 - -
Pumo11g02262 798 SMART rrm1_1 469 542 IPR000504 GO:0003723
Pumo11g02262 798 Pfam KH domain 246 318 IPR004088 GO:0003723
Pumo11g02262 798 CDD KH-I_BBP 230 323 - -
Pumo11g02262 798 MobiDBLite consensus disorder prediction 25 49 - -
Pumo11g02262 798 FunFam splicing factor-like protein 1 223 351 - -
Pumo11g02262 798 MobiDBLite consensus disorder prediction 8 24 - -
Pumo11g02262 798 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 470 539 IPR000504 GO:0003723
Pumo11g02262 798 SUPERFAMILY RNA-binding domain, RBD 464 556 IPR035979 GO:0003676
Pumo11g02262 798 MobiDBLite consensus disorder prediction 647 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02262 Pumo-Chr11 55191676 55206316 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g02262 468 599 Eukaryotic Initiation Factors Gene Family AT3G16380 30.216 1.66e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02262 K13095 - gmx:100800982 1288.48