Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02256 ATGGAGAAGAACAACAGTAATGTCTGCAAAATATGCAGTAAGTGCTTCTCTAGTGGAAAAGCCATGGGAGGACACATGAGATCTCACTTTGCCAAATTGCCGATTCCTCCAAAGCCCGAAACGAAGAATCAAGCACTAGACAACTCGGCCGAGTTGACCCATCGTCCTACTCAATTTGCTTCCTCGCTGACTTCTCATCCTCAAAAGAAACCATCGCAGAATTTTCGATCTTTGAAACGCAACTTTTTTGCCTTCTTGACAAACTCAAATAGAGAAAATGAATCTGGATCTTACCCTAAAAACCCAACCCGCAAAAGATCCAAATGCCACCGCAAATTTATTCCAGCGGCTGAGATGAATGCTGAACCAAAACTAGTGAGTTCGAAACCTGACTCTCTTCTTGCAGAAGAAGCTGCTAGGACTCTATTAATTCTTTCCAAGGATAAATGGCCAGAAAGCAAAGAGACCAAGAAGCAAAGAATGAAGGAGACCAACAAAATGAAGGCAAAAGACAGAGAAAATGGTAGAGATGACTTGCTTGTTCAGACTCAATCTCGAGCCAAGTTCACGTGCAAGAGGTGCGGGAAAACATTTCAATCTTATCAAGCTCTTGGTGGACACAGAGCAAACCATAAGAAAAATGACAATATATGCCAAGAGGTTGGTGACTCTAATGATGACGGAAGTGACAAAAATAGTGTTGTTGTAGATCAGAAAGTGTTTGAGTGCCCATACTGCTCCAAAGTGTTCGAGTCTGCGCGCGCACTCGGTGGACACAAGAAGGTACACTTCTCCAAGACTATGATTGCTAATGCTCAAACTACTGCTAATCAATTTGGTGGCAAGTTGGTAGTAGATCTCAATTTTCCAGCTCCTAGAGAAGATGGAGAGTGTTCAATGAAGAATGACTACTTTTAA 918 0.4227 MEKNNSNVCKICSKCFSSGKAMGGHMRSHFAKLPIPPKPETKNQALDNSAELTHRPTQFASSLTSHPQKKPSQNFRSLKRNFFAFLTNSNRENESGSYPKNPTRKRSKCHRKFIPAAEMNAEPKLVSSKPDSLLAEEAARTLLILSKDKWPESKETKKQRMKETNKMKAKDRENGRDDLLVQTQSRAKFTCKRCGKTFQSYQALGGHRANHKKNDNICQEVGDSNDDGSDKNSVVVDQKVFECPYCSKVFESARALGGHKKVHFSKTMIANAQTTANQFGGKLVVDLNFPAPREDGECSMKNDYF 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02256 305 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 296 IPR044303 GO:0006355
Pumo11g02256 305 Pfam C2H2-type zinc finger 189 213 - -
Pumo11g02256 305 Pfam C2H2-type zinc finger 8 29 - -
Pumo11g02256 305 Pfam C2H2-type zinc finger 240 263 - -
Pumo11g02256 305 ProSitePatterns Zinc finger C2H2 type domain signature. 9 29 IPR013087 -
Pumo11g02256 305 ProSitePatterns Zinc finger C2H2 type domain signature. 243 263 IPR013087 -
Pumo11g02256 305 ProSitePatterns Zinc finger C2H2 type domain signature. 191 211 IPR013087 -
Pumo11g02256 305 MobiDBLite consensus disorder prediction 152 175 - -
Pumo11g02256 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 189 216 IPR013087 -
Pumo11g02256 305 SUPERFAMILY beta-beta-alpha zinc fingers 189 263 IPR036236 -
Pumo11g02256 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 241 268 IPR013087 -
Pumo11g02256 305 SMART c2h2final6 7 29 IPR013087 -
Pumo11g02256 305 SMART c2h2final6 189 211 IPR013087 -
Pumo11g02256 305 SMART c2h2final6 241 263 IPR013087 -
Pumo11g02256 305 SUPERFAMILY beta-beta-alpha zinc fingers 6 34 IPR036236 -
Pumo11g02256 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 7 34 IPR013087 -
Pumo11g02256 305 Gene3D Classic Zinc Finger 186 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02256 Pumo-Chr11 55137623 55138540 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g02256 9 300 C2H2 Transcription Factor Family AT3G60580 32.903 6.63e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo11g02256 zf-C2H2_6 1.5e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02256 - - ccaj:109798515 405.601