Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02251 ATGTATGGAGGGGTTCCCGTTGCTTGCAGGACGCGTAGCAAGCGAGGAAGGGTGGTTGAAAGTGGTTTAATAACGGCCCAGAAGAAGAAAAGGGTGCATGACCATGAAGTGATTTTCTTGGAAGATGAAGATGAAGATGCAAGTGTCAACATTGAACCTGTCTCTGGCGCTTCTTCTTCATCATCTTTGAAGCGTGAAAGGGTATCTGAACGTGGTTTGGGAGGGCATGCAGATCACCCTATTGAAATCGGTGACAGCGATGATGATGGTTGTATATCTGAAAACCCGGTGATATTGTCGGATGATTCACATGGGGATAATCGGAGAGAGAAGGAAAATGAAGAATATGATTTTCTTTTGTCTTTAACGGAGAGTGAGGATGGTGTGACTAGTGATGAAGATTTTCAGGTTGATGAGAGTGATTACTACTCGAGCAGTGAGGACAATGATTCTTCTTCTCATGATGATGATGATGAGAGGAGGGGATACAGCAAGAGGGTGAGAAAGGTGGAGAGTGAAACTGCAAGCAGTGGAGTTTGCAAAAGAAAAGGTAATGAGCAGGTAGAGGAGGAGGGGGAGCAATGGATTGGTGCTGATTGTGCTAGTGCCACCTCTAGTAAATCTGAGATTTATAAGGAGGAAGCAAGGAATGCAGCACAGAAACATCAAGCAAAGAGAGTACAAAGTGTCGTTGGTGATAATCACTGGGAAAGTTCTGGTTGCTCTATGCCTTCTCAAGCTGAAGCACTAGAGCATAGGAAGAAAAGAGATAGAGGTCATCAAAGTGCGTCATTGCAGAAAAAGAGAGAAGTTTCAACTGTGATCAAGAAGAGTGAGAAAAATAATAATGCAAATGCCGATGACTGTGTGAATCTCAATGACCATGAAGGAAAAGAGCATCATCACGTCAAAGGAACAGGCGGGAGGAGTGTTTCTCTTTTGCCAAAAAGCAAAGAGAAGATAGGAGATTCGGCTAAAGATGGGAAGGGAAGAGAGCATAAATATGGGTTTAATAGCTATAAACGTGAGAAGGTAAGGGTGGTGGATGATGAAACTGGTGACAAAGATGAGCTGCATGAAGTCCTAAGGATGCCATCTAGAACAAAAAACCGATGTTTTAAATTTTTTACTGAATGCTTTGGGGGCAAGAATGATTCTTTCAAAGATGATTCAAATCAGTTGGAAGAAAAAGATGATGATGTTGGTCAGGGTCAGACTCAGTCAGTAGCTTCCAGGGAAACAGTCCCTTTGAATTGGAACTTTATGAAGAAAGAACCTATTGAAAAATCAGAGTTTGAGAAGGAGTTAGATATCTTGTGGGGTGAAATGGATATGCTGCTTCGAGGTGAAGAAATTGGGTCTCAGGTTGATAATATAGGGACAAATGAAGCAAGAGAAAATGAAGAAAATTCAGCCTCGCAGTGCAAGCATGACACTATTTTTAATGAGGAGATTGGGATATACTGCAGATGGTGTGGTTGGATTGCCACTGAAATCAAATATATCACGCCACCATTTGTAAGCACAGTGGATTCTGAAAGATGTGGTAGAAGGGTGTCATCTGGTGGAGGGAACACCTCACAGTTTGATGGGGATCTGTTTAATGATTCTGGTGATGACTCAAAAGCAGTTTGGTCTCACAATGAAGGCACAGTTTGGGACCTTATTCCTGACATAAAGCATAGTTTGTATCCTCATCAACAAGAAGGGTTTGAGTTTATTTGGACAAATTTGGCAGGAACCACTGACCTTGCCAAATTGAAGAGGGTTAACCCATGTAGTGAAGGTGGATGCATTGTTTCTCATGCTCCTGGAACAGGAAAGACGAGGTTGACCATGGTGTTTCTTCAGACATATTTGCGATTGTTTCCAAAGTGTCTACCTATTATCATTGCTCCTGCCAACATATTGCTTACATGGGAAGATGAGTTAAGGAAGTGGAACATAGGAATTCCATTCCATAACTTGAACAATTCTGAATTATCGGGAAAAGAGCAACTCATTAATGAAGTTGACTGGCCTGGCAATCAAAGGCAGAATAAGGATGCCATACGAATGGCGAAGTTGTGTTCATGGTACAAAGAGAAGAGCATTCTATTAATCAGCTACAATTTGTATGAGAAGTTAGCAGGGGCCACGTCTGAAGGTGATGGTGAAAAAGAGAAGAAAAATAGAAAGATGAAAAAAAAGAAGAAACGTGCAAGGACAAGGGACTACATTGAAAGTGGAATGGGAAAGGTTCTGCGTGACTATCCTGGTTTGCTAGTTCTTGATGAAGGGCACACTCCTCGGAATCAGAATAGTTATATTTGGAAGGTTCTTTCTGAAAGTAGAACTCAGAAGCGAATCCTTCTTTCGGGGACACCTTTCCAGAACAATTTCTTGGAACTTTACAATATTTTGTGCTTAATGAAACCATCCTTTCCTGACAGCATACCACAAGAACTCAAGAAGTTTTGCCAAAGTAGACTAAGGAAAGCTTCAAAAGATGTGAGTTGGGAACCTGTTTCGTCTGGAAATACAGCTGATGAGAAAATAAACCAGCTAAAATTGCTGATGAATCCCTTTGTTCATGTTCACAAAGGTAGCATTCTTCAGAAGAACCTTCCTGGGTTGAGAGATTGTGTGCTGGTTTTGAAGCCAGACAGTTTGCAGCAAGAAACTCTAGAGAGCATTGAATGGTCTCAAAGTGCACTGAACTTTGAACACAAGTTGGCCTTGGTCTCCGTCCATCCATCCCTTTTCCTCAACTGCTCTCTGTCAAAAAAAGAAGAATCTGTTGTTGACAAGGATAAGTTGGAAAAGCTTAGATTGAACCCTTATGAAGGGGTCAAAACCAAATTTCTGATTGAGTTTATAAGACTATGTGATGCAGTTAATGAGAAAGTCCTCGTTTTCAGCCAATTCATTGATACTTTATGCTTAATTAAGGACCAACTTGAGTCAGCCTTGAATTGGTCTGTGGGGACGGAAGTGTTGTATATGTATGGCAGGCTCGACCAAAAGCAAAAACAGTCCCTCATTCATAGATTCAATGATTCAAACAGCCAAGCAAAGGTGTTGCTTGCTTCTATAAAAGCATCTTCTGAAGGCATTAACTTAATTGGAGCTTCAAGGGTCGTGCTTCTTGATGTTGTTTGGAATCCCTCAGTGGAAAGGCAAGCTATTTGCCGAGCATATAGACTTGGACAAAAGAGGGTTGTTTTCACTTATCATCTCCTTGCACAGGGCACCCCTGAATGCACAAAATATTGTAAACAAGCAGAAAAGAACCGGTTATCTGAACTTGTTTTCTCAAATAGAAATGCTGAAAGTGGTAGGCTCAAGAGTAGTGGAGTAATGCTTGAGGATATTGAGGATAGAGTTCTTGATCTCATGGTTCAGCATAAAAATCTCAAGGATATGTTTGGTGAATGTCTGGTTCAACCAAAGGAGAGAGATTTGGAGACTTTGGGCCCCTGA 3462 0.4139 MYGGVPVACRTRSKRGRVVESGLITAQKKKRVHDHEVIFLEDEDEDASVNIEPVSGASSSSSLKRERVSERGLGGHADHPIEIGDSDDDGCISENPVILSDDSHGDNRREKENEEYDFLLSLTESEDGVTSDEDFQVDESDYYSSSEDNDSSSHDDDDERRGYSKRVRKVESETASSGVCKRKGNEQVEEEGEQWIGADCASATSSKSEIYKEEARNAAQKHQAKRVQSVVGDNHWESSGCSMPSQAEALEHRKKRDRGHQSASLQKKREVSTVIKKSEKNNNANADDCVNLNDHEGKEHHHVKGTGGRSVSLLPKSKEKIGDSAKDGKGREHKYGFNSYKREKVRVVDDETGDKDELHEVLRMPSRTKNRCFKFFTECFGGKNDSFKDDSNQLEEKDDDVGQGQTQSVASRETVPLNWNFMKKEPIEKSEFEKELDILWGEMDMLLRGEEIGSQVDNIGTNEARENEENSASQCKHDTIFNEEIGIYCRWCGWIATEIKYITPPFVSTVDSERCGRRVSSGGGNTSQFDGDLFNDSGDDSKAVWSHNEGTVWDLIPDIKHSLYPHQQEGFEFIWTNLAGTTDLAKLKRVNPCSEGGCIVSHAPGTGKTRLTMVFLQTYLRLFPKCLPIIIAPANILLTWEDELRKWNIGIPFHNLNNSELSGKEQLINEVDWPGNQRQNKDAIRMAKLCSWYKEKSILLISYNLYEKLAGATSEGDGEKEKKNRKMKKKKKRARTRDYIESGMGKVLRDYPGLLVLDEGHTPRNQNSYIWKVLSESRTQKRILLSGTPFQNNFLELYNILCLMKPSFPDSIPQELKKFCQSRLRKASKDVSWEPVSSGNTADEKINQLKLLMNPFVHVHKGSILQKNLPGLRDCVLVLKPDSLQQETLESIEWSQSALNFEHKLALVSVHPSLFLNCSLSKKEESVVDKDKLEKLRLNPYEGVKTKFLIEFIRLCDAVNEKVLVFSQFIDTLCLIKDQLESALNWSVGTEVLYMYGRLDQKQKQSLIHRFNDSNSQAKVLLASIKASSEGINLIGASRVVLLDVVWNPSVERQAICRAYRLGQKRVVFTYHLLAQGTPECTKYCKQAEKNRLSELVFSNRNAESGRLKSSGVMLEDIEDRVLDLMVQHKNLKDMFGECLVQPKERDLETLGP 1153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02251 1153 CDD SF2_C_SNF 920 1074 - -
Pumo11g02251 1153 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 951 1119 IPR001650 -
Pumo11g02251 1153 Gene3D - 870 1140 IPR027417 -
Pumo11g02251 1153 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 553 856 IPR027417 -
Pumo11g02251 1153 Pfam SNF2-related domain 574 891 IPR000330 GO:0005524|GO:0140658
Pumo11g02251 1153 Coils Coil 1115 1135 - -
Pumo11g02251 1153 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 589 807 IPR014001 -
Pumo11g02251 1153 SMART helicmild6 978 1063 IPR001650 -
Pumo11g02251 1153 MobiDBLite consensus disorder prediction 148 176 - -
Pumo11g02251 1153 Gene3D - 541 857 IPR038718 -
Pumo11g02251 1153 MobiDBLite consensus disorder prediction 291 306 - -
Pumo11g02251 1153 MobiDBLite consensus disorder prediction 714 735 - -
Pumo11g02251 1153 SMART ultradead3 559 815 IPR014001 -
Pumo11g02251 1153 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 752 1108 IPR027417 -
Pumo11g02251 1153 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 120 1147 IPR044567 GO:0080188
Pumo11g02251 1153 MobiDBLite consensus disorder prediction 64 86 - -
Pumo11g02251 1153 MobiDBLite consensus disorder prediction 127 145 - -
Pumo11g02251 1153 MobiDBLite consensus disorder prediction 42 313 - -
Pumo11g02251 1153 Pfam Helicase conserved C-terminal domain 948 1063 IPR001650 -
Pumo11g02251 1153 MobiDBLite consensus disorder prediction 390 409 - -
Pumo11g02251 1153 MobiDBLite consensus disorder prediction 101 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02251 Pumo-Chr11 55080470 55084569 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g02251 961 1109 RAD5 or RAD16-like Gene Family AT5G43530 38.255 8.67e-20 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pumo11g02251 SNF2_N 1.6e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02251 K10875 - gmx:100812737 1714.51