Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02246 ATGGAAGCGGCTGTGGTGGACGTCGGCTCTAAGCTCCTCAAAGCGGGTTTTGCAATTCCTGACCAGACTCCCGCCATGACAATTCCCACTCAGATGAAGCAATTGCTCGATGATGGATCAGCCACTGATAATTCACTGGCTGACAATGTCACTGTTGATCCTGTCGTGCGAGGATTTATTAGAGATTGGGATGCCATTGAAGATTTGTTGCACCATGTTTTATATACTGGCCTTGGATGGGAAATTGGCAATGAAGGACAAATACTATTTACAGATCCACTTTGTACCCCAAAGGCGAACAAAGAACAGTTGGTGCAACTAATGTTTGAAACATTCAACATATCAGGGTTTTATGCCTCAGAACAAGCAGTGTTATCACTCTATGCTGTGGGACGTATCTCAGGCTGCACTGTTGATATTGGACATGGGAAAATAGATATTGCACCAGTAATTGAGGGTGCTGTTCACCACATTGCCTCAAGAAGATTTGAGTTTGGAGGTATTGATCTAACTAATTTCCTCGCTCAAGAACTTGGCAAGTCCAATCCACAAGTAAATATCAGCATGTCTGATGTGGAGAAAATAAAAGAGCAGTACTCATGCTGTGCTGAAGATGAATTAGCTTATCAGAAGACCCAATATTCTTGTCCTGTGGAGAAGCACACCCTTCCTGATGGACAGGTGATAACAATTGGGAGAGAAAGATATACTGTTGGGGAAGCTTTATTCCAGCCATGTCTATTGGGTTTAGAGGCTCATGGCATTGTTGATCAGCTTGTCCGTGCTATTTCAACTGTGTCATCTGATAATCAACGGCAGCTGCTGGAAAATACTGTGGTTTGTGGTGGCACTTCTTCTATGACAGGTTTTGAAGAGAGATTTCAGAAGGAATCTAGCTTAAGTTCATCTGCTGTTCAACCTACCCTCGTTAAGCCTCCAGAATACATGCCAGAAAATTTAACCATGTATTCTGCATGGGTGGGAGGTGCCATACTTGCCAAAGTGGTTTTCCCTCAAAATCAGCATATAACTAAGGCAGACTATGATGAAACCGGACCTTCCATTGTTCACCGGAAATGCTTCTGA 1086 0.4328 MEAAVVDVGSKLLKAGFAIPDQTPAMTIPTQMKQLLDDGSATDNSLADNVTVDPVVRGFIRDWDAIEDLLHHVLYTGLGWEIGNEGQILFTDPLCTPKANKEQLVQLMFETFNISGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVHHIASRRFEFGGIDLTNFLAQELGKSNPQVNISMSDVEKIKEQYSCCAEDELAYQKTQYSCPVEKHTLPDGQVITIGRERYTVGEALFQPCLLGLEAHGIVDQLVRAISTVSSDNQRQLLENTVVCGGTSSMTGFEERFQKESSLSSSAVQPTLVKPPEYMPENLTMYSAWVGGAILAKVVFPQNQHITKADYDETGPSIVHRKCF 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02246 361 Gene3D Actin; Chain A, domain 4 165 252 - -
Pumo11g02246 361 Pfam Actin 2 361 IPR004000 -
Pumo11g02246 361 CDD NBD_sugar-kinase_HSP70_actin 4 168 - -
Pumo11g02246 361 Gene3D - 5 355 - -
Pumo11g02246 361 Gene3D - 123 324 - -
Pumo11g02246 361 PRINTS Actin signature 100 113 IPR004000 -
Pumo11g02246 361 PRINTS Actin signature 217 233 IPR004000 -
Pumo11g02246 361 PRINTS Actin signature 45 67 IPR004000 -
Pumo11g02246 361 PRINTS Actin signature 125 144 IPR004000 -
Pumo11g02246 361 FunFam Actin-related protein 7 4 127 - -
Pumo11g02246 361 SUPERFAMILY Actin-like ATPase domain 131 361 IPR043129 -
Pumo11g02246 361 SMART actin_3 1 361 IPR004000 -
Pumo11g02246 361 FunFam Actin-related protein 7 165 252 - -
Pumo11g02246 361 SUPERFAMILY Actin-like ATPase domain 2 138 IPR043129 -
Pumo11g02246 361 PANTHER ACTIN 4 354 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02246 Pumo-Chr11 54997273 55002203 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g02246 5 361 Cytoskeleton Gene Families AT3G12110 37.600 2.15e-70 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02246 K16615 - gmx:100813266 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g02246 11 54997273 55002203 Pumo11g02246 11 54997273 55002203 ECH