Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02233 ATGAAGAGATTGAGGTCGAGCGAGGATCTCCACTCCTACGGCGATAAGAATAATGGTTGCAAGGATTCGAACAATCTGAACCGTTCGTTTTCATCGGCGCAGCGGAGCTTCTACTACAAGCCGGAGAATGCGCGCAAGGGTTTGGTCTCGTCTTCGTCGTCGTCATCGCGCTACGAGAGGGATCGGACGGTGGAGGAGGATCGGGAGGGTTCGCGGCTGGTTCGGAAGCGACCGGAGCACGATTTCGAGGGTTTCGATCGGAGGAAGGGGTTCGATCGGTACAGGGAGAGTGACCGGAGTTTGATTCACCGCTCGGAGAGTTTCTGCGGCAGCGGGTCGCGGAGGGATCAGTTTCCGAAGGGGTTTCGGTCGGAGAGGGAGCGGTCGCGGAGGGAGGGGAGCGTGTCGTCGTGGCGGAGAGGGTTGAAGGATTTGGACGATAGAGAGAGGGTGGTGCGTTCCCCTAAGGGTTTGAGGGATGTGAAGTCTCCGTCGTGGTCGAAGGATTCTGTTTCTGAGAGCGAGCAATCGAAGAAGAGATCTTCTTCTTCTCCGAGGCCTTTCAGAGATGGTAACTCCAACAAGTCTAAGTCCAAGTCTCCCACTTGGTCTAAGGATTCGGAGAGCGAGCAGTCCAAGAGTGTTGAGGTGAAGAAGGTTGAGGAGGATTTGTTGCAGCAGGTTCAGAGTGGGAGTGGTAGTGAGATGGAGGAAGGGGAGCTTGAGCCTGAACCCCAAGCGGAAATGGTTCCTCCTGTTAGTGAAGACTTGCCCTCTGTTGCTTTGGAGACTGATGAGAAGCAAGTTCAGAAGAGTGAATGCCACCCTAATGATCATGACACTGATACTGCTGTGGGTGAGAGACAGGAGTTGTCGAGTAAGGAGGAAGGGAAACCTAATGAGGAGCTTGGTTGTTGTGAGGTAAAGGATGGAGAGAAGAAAGAAGCTGATGAGCTGCCGGATGTTCAGACTGAGAAAATGCTTGTTACTGAGACTGAAGTTGAGTCTGTGGGTAATGGTGACGATGATAAAAAAGAGGAGGGTTTGGATGCTGGTGCTGAGTGCAAGGAGGAAACAAAGAAGGGTGCGGATGTGGAGAAGGAGAAGGAGAAGGAGAAGGTGGTGTTGAATGAAGAGGAGGATAAGCAGGACAATGACAAGGGTGTAGATCTAGGAACCAGCACGGATGTTGTCAAACCTGAGTTAAATGATGGAGTTACAACAGAAAATGAAGTTCCCAAGGAAGTGGATAGAGAAATGATGATGGAGAGTGTGGTCAGCATTGCAAAGGATAAAGGCAAAGGTGTCTCTGTTGCACTTGTACCTCCTACTGATGTTGCTCATTCTTCAGATGATGGCTTGTGGATTGATAGAGGGTCGAGAGACATCCCGATGTGTTCTGTTGATGTTATAGAAGGTCCAAGCACGAGGGGGTTCGAGTTGTTTTCCAGATCTCCTGTAAGGAAGGTGGAGAAAGTAGATCACTCAGTTCTCAACAAGCACAAGGATGACATGGAGCAGCTTGATCTTACTCTTAGCTTGCCGAATGTTCTGTTACCTATTGGTGCTCATGAGACAACATCGCAAGCCCCTGGATCCCCTAGTCAAGCGCGGAGTGTGCAGTCTTTAAGTAATACATTTTGTACTAACTCAGATGGTTTTACTGCATCAATGTCCTATTCAGGTTCCCAATCATTCTATCACAATCCAAGCTGTTCTCTGACCAAAAATTCAGTGGACTATGAACAATCTGTTGGCAGTCGCCCCTTGTTCGGGGGAATAGATCAAGTTTCCCAGGGATGTTGGCAAGGTCAGTCTCAGAGTGATCCCAAACAGAAAGAAGTTCCTTTTGGTCAAAGAACCTCGGTGAATGGAAATGGCTCTCTTTTCCAATCTCAGGCATCATGGGGTGTTTTAGACAGTCAAGCTGTGAAGGGTCAACATTCCAGGGTTCTAGAAGGAAGTTCAAAAATGGGCAGTGGACTTGACAGGCAATTGAGTTTTCATAAGCAGTTTTCAGGGCAGTCAAGACGGCACGATGATGTTAGATCTCCGTCACAGAGTGTTGGGTCTCATGATATTGGATCAAATTATAGCTTTGAGAAAAAGAGGGAGGTTAGAGACAGGAGTAGTGGTAGTCTGTATCGAACTACCAGCCAGAAGGAACAAGAACAACTTCTGATGGGTGGAGTTGATTTTGTTGAGACGATCATTGCAAGAATTGTTTCTGAACCTGTTCATGCAATGTCCAGAAAGTTTCATGAAATGACCGGACAGTCCATAGTATGTCTGAAAGAGGGTATTCGTGAAATCATGCTTAATGCAGATAAGCACGGGCAGATACTTGCTTTTCAAAAAGTTCTGCAGAACAGGTCTGATATAATCTTGGATGTCCTATTGAAGTGCCACCGAGTGCAACTGGAAATTTTGGTTGCTTTAAAAACTGGTTTAACTCATTTTCTTCACCTAGACAGCAGCATTTCATCTTCTGAGTTGGCTCAAATTTTTCTGAACTTAAGGTGTAAGAATCTTTCATGTAGAAGTCAGTTGCCTGTGGACGAATGTGATTGCAAGGTTTGTGCACAGAAGAATGGTTTTTGCAGGGAATGTATGTGCCTTGTGTGTTCTAAGTTTGACAATGCCTCAAATACATGTAGTTGGGTTGGATGTGATGTTTGCCTTCACTGGTGCCATACTGACTGTGGATTACGGGAATCTTATATTAGAAATGGGCATGGGACAAAAGGGATGACTGAGATGCAGTTTCACTGTATTGCTTGTGATCATCCTTCTGAGATGTTTGGCTTTGTCAAGGAGGTGTTTCAAAATTTTGCAAAAGAATGGTCAGTCGAAACCCTTTGCAAAGAGCTTGAATATGTAAAGAGAATTTTTTCTGCCAGCAAGGATATGAGAGGGAGACATCTGCATGAGATTGCAGAGCAAATGCTGCCAAGGTTGGCAAATAAGTCTAATCTTCCTGAGGTTTTGAGGCACATCATGTCTTTCCTTTCGGATGGTGATTCTTCCAAATTACCCATGACAACAAACTTTTCTGGGAAGGAACAAATCAAAGAAAACAATGGAGTAGCTGGGCCCAGCCAGGGAGCAGCTTGGGTGAAATCTATTTATTCAGAAAAGCCACCTCTGTTAGAAAGGCCGGCAAATATCCTTCCTACCTTTGACCAGAATGATAAAAGAACTCTTGCGCAAGAATTGCAGATGAGTAGTATCCAAAAGGACTTCTGTTTTGATGAATTGGAGAGTATAGTAAAAATTAAACAGGCAGAGGCTAAAATGTTTCAATCACGTGCTGATGATGCTAGAAGAGAAGCTGAAGGGTTGAAGCGCATTGCCCTTGCAAAGAATGAGAAAATTGAGGAAGAATATACCAATCGAATTGCCAAGTTGCGACTGACTGAAACTGATGAAATTCGTAAACAAAAATTTGAAGAAGCCCAAGCATTAGAGAGGGCACATCTGGAGTATTTGAACATGAAAATGAGAATGGAAGCAGACATTAAAGATCTGTTATCCAAAATGGAAGCTACCAAAATGAGCCTTGCCATGTGA 3570 0.4557 MKRLRSSEDLHSYGDKNNGCKDSNNLNRSFSSAQRSFYYKPENARKGLVSSSSSSSRYERDRTVEEDREGSRLVRKRPEHDFEGFDRRKGFDRYRESDRSLIHRSESFCGSGSRRDQFPKGFRSERERSRREGSVSSWRRGLKDLDDRERVVRSPKGLRDVKSPSWSKDSVSESEQSKKRSSSSPRPFRDGNSNKSKSKSPTWSKDSESEQSKSVEVKKVEEDLLQQVQSGSGSEMEEGELEPEPQAEMVPPVSEDLPSVALETDEKQVQKSECHPNDHDTDTAVGERQELSSKEEGKPNEELGCCEVKDGEKKEADELPDVQTEKMLVTETEVESVGNGDDDKKEEGLDAGAECKEETKKGADVEKEKEKEKVVLNEEEDKQDNDKGVDLGTSTDVVKPELNDGVTTENEVPKEVDREMMMESVVSIAKDKGKGVSVALVPPTDVAHSSDDGLWIDRGSRDIPMCSVDVIEGPSTRGFELFSRSPVRKVEKVDHSVLNKHKDDMEQLDLTLSLPNVLLPIGAHETTSQAPGSPSQARSVQSLSNTFCTNSDGFTASMSYSGSQSFYHNPSCSLTKNSVDYEQSVGSRPLFGGIDQVSQGCWQGQSQSDPKQKEVPFGQRTSVNGNGSLFQSQASWGVLDSQAVKGQHSRVLEGSSKMGSGLDRQLSFHKQFSGQSRRHDDVRSPSQSVGSHDIGSNYSFEKKREVRDRSSGSLYRTTSQKEQEQLLMGGVDFVETIIARIVSEPVHAMSRKFHEMTGQSIVCLKEGIREIMLNADKHGQILAFQKVLQNRSDIILDVLLKCHRVQLEILVALKTGLTHFLHLDSSISSSELAQIFLNLRCKNLSCRSQLPVDECDCKVCAQKNGFCRECMCLVCSKFDNASNTCSWVGCDVCLHWCHTDCGLRESYIRNGHGTKGMTEMQFHCIACDHPSEMFGFVKEVFQNFAKEWSVETLCKELEYVKRIFSASKDMRGRHLHEIAEQMLPRLANKSNLPEVLRHIMSFLSDGDSSKLPMTTNFSGKEQIKENNGVAGPSQGAAWVKSIYSEKPPLLERPANILPTFDQNDKRTLAQELQMSSIQKDFCFDELESIVKIKQAEAKMFQSRADDARREAEGLKRIALAKNEKIEEEYTNRIAKLRLTETDEIRKQKFEEAQALERAHLEYLNMKMRMEADIKDLLSKMEATKMSLAM 1189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02233 1189 MobiDBLite consensus disorder prediction 697 711 - -
Pumo11g02233 1189 MobiDBLite consensus disorder prediction 260 324 - -
Pumo11g02233 1189 MobiDBLite consensus disorder prediction 186 200 - -
Pumo11g02233 1189 MobiDBLite consensus disorder prediction 670 719 - -
Pumo11g02233 1189 MobiDBLite consensus disorder prediction 337 389 - -
Pumo11g02233 1189 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1084 1104 IPR004082 -
Pumo11g02233 1189 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 806 821 IPR004082 -
Pumo11g02233 1189 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 878 898 IPR004082 -
Pumo11g02233 1189 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 791 806 IPR004082 -
Pumo11g02233 1189 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1123 1145 IPR004082 -
Pumo11g02233 1189 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 752 774 IPR004082 -
Pumo11g02233 1189 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 948 967 IPR004082 -
Pumo11g02233 1189 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 832 853 IPR004082 -
Pumo11g02233 1189 MobiDBLite consensus disorder prediction 1 27 - -
Pumo11g02233 1189 MobiDBLite consensus disorder prediction 58 79 - -
Pumo11g02233 1189 MobiDBLite consensus disorder prediction 118 157 - -
Pumo11g02233 1189 MobiDBLite consensus disorder prediction 41 79 - -
Pumo11g02233 1189 Pfam PHD - plant homeodomain finger protein 841 961 IPR032881 -
Pumo11g02233 1189 CDD PHD_OBE1_like 871 927 IPR047578 -
Pumo11g02233 1189 Coils Coil 1090 1128 - -
Pumo11g02233 1189 MobiDBLite consensus disorder prediction 201 223 - -
Pumo11g02233 1189 Pfam Coiled-coil region of Oberon 1061 1177 IPR032535 -
Pumo11g02233 1189 MobiDBLite consensus disorder prediction 1 16 - -
Pumo11g02233 1189 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 1186 IPR004082 -
Pumo11g02233 1189 MobiDBLite consensus disorder prediction 102 410 - -
Pumo11g02233 1189 MobiDBLite consensus disorder prediction 601 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02233 Pumo-Chr11 54836702 54841948 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g02233 841 986 PHD Gene Family AT5G57380 27.397 4.99e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02233 - - gmx:100817003 2098.94