Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02211 ATGATGGGGTACCTCTACCTTTCTTGCAGAGCCGAATCCGCTGTCTCAACCTCCAATTCGGTGTCTTCTTCCAAACCAACCAAAGAGAAAGAGAAAAGCAGCATCAAGATCCAAGAGTTTCAGTACAGTGACCTCGAAGCTGCCACCAATGGCTTCTCCGACCGCAAGCTCCTCGGCAAAGGGAGCCACGGCTATGTCTACAAAGCCGTCGTTCGCGGCCGTCCCGTGGCGGTGAAGCGTCCATCGCGGCCACACCATCACGGCGGTGTTGTTCCCCGACCGGTTTCTTCCTCGGCACCCTCCGAGATCACCAACGAGGTCGACAACGAGATCGACATCTTGTCCAAAATCCAGAGCCCCAGGTTGGTCAATTTGGTCGGTTTCACCAATGATTCAAGAGACAGGCTTTTGGTGGTGGAGTTTATGAGCAATGGCACCCTTTACGATGTTCTTCATTCATCTCCCAGGCCTCCCAATTGGGGTAGGAGGATTCGTTTGGCTTTGCAAACTGCAAAAGCCATTGACACTCTTCACTCCTCAACCCCTCCTGTGATTCACCGTGATATCAAGTCTGCTAATGTCCTCATCGACCGCAGTTACAATGCAAGGTTAGGTGATTTTGGTTTGGCCCTAAGGGGCCATGTTGATGACTATAGACTCAGGTCCACTCCTCCTGCTGGCACTATGGGCTATCTTGATCCTTGTTATGTCACTCCTGATAATTTGAGCACCAAGACTGATGTTTTCAGCTTTGGGATTTTGTTGTTGGAGATTATAAGTGGAAGAAAGGCCATTGATATCACCTATTCACCTCCTTCTATTGTGGATTGGGCTATTCCTCTCATTAAGAAAGGGAAGTTGTTGGCTGTTTATGATCCTAGAATAGCACCCCCCAAGGATCCGATTGTGAGGAAGCAGTTGGCTGTGATTGCTGCCAAGTGTGTAAGGTCTTGCAGGGAGAGAAGGCCTTCTATGAAGGAGGTTGTTACTTGGCTTTGTGGGTTGTGTAAATTGGTGCCTCTTCATTCGTGGAATGGTTTTAACAACCCTTGTATGATGGTTGAGACTATGGGGCGCCCGGTTGAAGCAGCAAGGAATGGTCAATTCAGTTCTAGGCTGGAAGGTGTGGAGGAAGGAAATTTTGGTGCTTTGGATGCCAGGTTGTCAAAGTCTGCAATGAGGTATTCTAGGAGGGTTTATTCTGATTTGGGGTTCAGCAGCAACTTGATGGACTTGATGGCTACTACTGAGGAGCCTGAATTTCTGAGAGATGCTAATGGGGTGGAGCATAGTTCTAAATCGGCTGAACAAGGTTCTAGTAGTTCCAGGTTTGGCAGTGGAAGATATTCCATAAAAGGGAGGAATCTATACCGGCCTTGTGGGAGTGACAAGGATGCGTTTGGCTTGAGTAAAGGCCAGATTTTATGTCAGAGTGAGACTGCTTCAAAACAGGATGCGGTTTCTGGTTCGAATTCGAAGAATTTGAACTCTCTGGCTGCTGAGGTTATCTAG 1512 0.4828 MMGYLYLSCRAESAVSTSNSVSSSKPTKEKEKSSIKIQEFQYSDLEAATNGFSDRKLLGKGSHGYVYKAVVRGRPVAVKRPSRPHHHGGVVPRPVSSSAPSEITNEVDNEIDILSKIQSPRLVNLVGFTNDSRDRLLVVEFMSNGTLYDVLHSSPRPPNWGRRIRLALQTAKAIDTLHSSTPPVIHRDIKSANVLIDRSYNARLGDFGLALRGHVDDYRLRSTPPAGTMGYLDPCYVTPDNLSTKTDVFSFGILLLEIISGRKAIDITYSPPSIVDWAIPLIKKGKLLAVYDPRIAPPKDPIVRKQLAVIAAKCVRSCRERRPSMKEVVTWLCGLCKLVPLHSWNGFNNPCMMVETMGRPVEAARNGQFSSRLEGVEEGNFGALDARLSKSAMRYSRRVYSDLGFSSNLMDLMATTEEPEFLRDANGVEHSSKSAEQGSSSSRFGSGRYSIKGRNLYRPCGSDKDAFGLSKGQILCQSETASKQDAVSGSNSKNLNSLAAEVI 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02211 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Pumo11g02211 503 FunFam Serine/threonine-protein kinase-like protein At1g28390 19 141 - -
Pumo11g02211 503 Pfam Protein tyrosine and serine/threonine kinase 56 330 IPR001245 GO:0004672|GO:0006468
Pumo11g02211 503 ProSitePatterns Protein kinases ATP-binding region signature. 58 79 IPR017441 GO:0005524
Pumo11g02211 503 SMART serkin_6 52 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g02211 503 MobiDBLite consensus disorder prediction 426 446 - -
Pumo11g02211 503 Gene3D Phosphorylase Kinase; domain 1 22 141 - -
Pumo11g02211 503 SUPERFAMILY Protein kinase-like (PK-like) 29 332 IPR011009 -
Pumo11g02211 503 MobiDBLite consensus disorder prediction 79 101 - -
Pumo11g02211 503 ProSiteProfiles Protein kinase domain profile. 52 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g02211 503 Gene3D Transferase(Phosphotransferase) domain 1 142 340 - -
Pumo11g02211 503 FunFam Serine/threonine-protein kinase-like protein 142 345 - -
Pumo11g02211 503 PANTHER OS01G0253100 PROTEIN 19 334 - -
Pumo11g02211 503 MobiDBLite consensus disorder prediction 431 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02211 Pumo-Chr11 54568001 54570169 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g02211 5 332 Receptor kinase-like Gene Family AT3G59420 41.908 1.01e-75 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Pumo11g02211 PK_Tyr_Ser-Thr 5.7e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02211 - - vum:124832395 892.493