LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo11g02188	ATGGCTGTCACTGTCACTTCTCGTTTTCATGAATCCGTCACCCGCAATGCACTTCTCTCCTATCTCTCTGAGTTTATCTCCACTTTCTTCTATGTCTTTCTTGTCGTTGGCGCTGGAATGTCCTCACGGAAGTTGATGCCTGATGCTTCACTGAACCCAACAAGTCTGGTTGTGGTTGCCATTGCAAGTGCTTTTGCTTTGTCTTCTGTTCTGTACATTGCATGGGACATCTCAGGTGGACACGTTAATCCGGCCGTGACCTTTGCAATGGCAGTGGGAGGCCACATTAGTGTACCAACCGCTCTCTTTTACTGGGTTGCTCAACTCATAGCCTCTATTATGGCTTGCCTTGTTCTAAGGGTCATTGTTGTTGGAATGCATGTTCCAACATACATTATTGCGGAAGAGATGACAGGGTTTGGAGCATCGGTGTTAGAGGGTATTCTGACATTTGTTTTGGTGTACACTGTGTATGCAGCCAGGGACCCTAGGCGTGGTCCAATGAGTTCCACTGGCATACTTGTAGTTGGACTAATGGCTGGGGCAAGTGTCTTGGCCGCAGGTCCATTCTCTGGCGGGTCAATGAACCCTGCGTGTGCTTTTGGCTCGGCTGCCATTGCAGGCAGTTTCAGGAATCAAGCAGTGTATTGGGTTGGACCCTTGATTGGTGCTACCATAGCTGGTCTTCTTTATGACAATGTGCTCTTCCGATCTCAGCCTACAGATTCAATTAGAGGAGTTTCAGAAGGAATTGGGGTGTAA	762	0.4816	MAVTVTSRFHESVTRNALLSYLSEFISTFFYVFLVVGAGMSSRKLMPDASLNPTSLVVVAIASAFALSSVLYIAWDISGGHVNPAVTFAMAVGGHISVPTALFYWVAQLIASIMACLVLRVIVVGMHVPTYIIAEEMTGFGASVLEGILTFVLVYTVYAARDPRRGPMSSTGILVVGLMAGASVLAAGPFSGGSMNPACAFGSAAIAGSFRNQAVYWVGPLIGATIAGLLYDNVLFRSQPTDSIRGVSEGIGV	253

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo11g02188	253	Gene3D	Glycerol uptake facilitator protein.	2	246	IPR023271	-
	Pumo11g02188	253	PRINTS	Major intrinsic protein family signature	100	119	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pumo11g02188	253	PRINTS	Major intrinsic protein family signature	63	87	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pumo11g02188	253	PRINTS	Major intrinsic protein family signature	177	199	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pumo11g02188	253	PRINTS	Major intrinsic protein family signature	214	234	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pumo11g02188	253	PRINTS	Major intrinsic protein family signature	145	163	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pumo11g02188	253	PRINTS	Major intrinsic protein family signature	19	38	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pumo11g02188	253	SUPERFAMILY	Aquaporin-like	10	240	IPR023271	-
	Pumo11g02188	253	ProSitePatterns	MIP family signature.	81	89	IPR022357	-
	Pumo11g02188	253	PANTHER	AQUAPORIN-8	7	237	IPR034294	-
	Pumo11g02188	253	FunFam	Probable aquaporin TIP5-1	3	243	-	-
	Pumo11g02188	253	Pfam	Major intrinsic protein	17	231	IPR000425	GO:0015267\|GO:0016020\|GO:0055085

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo11g02188	Pumo-Chr11	54299837	54301791	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo11g02188	6	250	Major Intrinsic Protein MIP	AT3G47440	63.673	2.77e-107	308

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo11g02188	K09873		-	gmx:100801448	458.373

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo11g02188	11	54299837	54301791	Pumo11g02188	11	54299837	54301791	ECH