Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02165 ATGAACAGCAGTGGCGGAGGGACTTTGATGGGTTTCAGTAATAATGGTTATTATGGGAGGTCGCCATTCACAGTGTCTCAGTGGCATGAACTGGAGCACCAAGCTTTGATCTTCAAGTACATGGTTGCGGGTCTTCCTGTACCTCCTGATCTCGTCCTTCCTATTCAGAAGAGCTTCGACTCTATCTCCCACGGTTTCTTTCACCATCCCACATTGAGTTATTGTTCCTTCTATGGGAAGAAGGTGGACCCTGAGCCAGGACGATGCAGGAGGACTGATGGAAAAAAGTGGAGGTGCTCCAAGGAAGCATACCCAGACTCCAAGTACTGCGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACAAACTATGACTCTCTCATCTTCAACTGTCACATCACTCACTGTCACTGGTGGTGGTGGTGGTGGTGGTGGTGGCGGCAGTGGAACTGTAAACTTTCAAAACCTCCCCACAAATGCCTTTGGTAATCTCCAGGGTACTGATTCTGGAACTGACCACACCAATTATCATCTAGATTCCATTCCCTATGCGATTCCAAGTAAAGAATACAGGTATCTTCAAGGACTTAAATCTGAGGGTGGTGAACACTGCTTCTTTTCTGAAGCTTCAGGAAGCAACAAGGTTCTCCAAATGGAGTCACAGTTGGAAAACACATGGCCTTCGATGTCAACCAGAGTTGCCTCTTTTTCTACATCAAAATCAAGTAATGATTCCCTGTTGCATAGTGATTATCCCCAGCATTCGTTTTTATCTGGTGAGTATGCGTCGGGAGAACATGTGAAGGAGGAGGGCCAGCCTCTTCGACCTTTTTTTAATGAATGGCCTAAAAGCAGGGAGTCATGGTCTGGTCTGGAAGATGAGAGATCCAACCAAACAGCCTTCTCCACAACTCAACTCTCAATATCCATTCCTATGTCTTCCGATTTCTCTGCAACGAGCTCTCAGTCCCCACATGTCGAAGCTAAATTGCTGTGTGGCGTGGAGGACAGGATCCAGTCCCTTAAGAATGAGCTCGAAATGATCAATGTCTTTCTCAAAACCTCAAAGGCTAACAAGGACATTGAAAAAATAGTTGTGAGCCAAATCAGAGATGTCGCCCACCTAGCTGAGGATGTCATCGACACGTCCGTTGCCAAAGTTGCCCTGCACAAGAGGAGAAGCATGCTGGGGAGGTTGCTCCATGGCGTTGACCAAGCCAGGTTGCTCCATGATACAGATCAAACGGTGGAAGGAAGAAGCAACGAGAGTGATGCTTCTACCAACCTACATTTGGGCTCCACTACCCTTGCCCGAAAGGTCTATAATAACAAGGTGAAACAATACTTTAGGTGCAGTGCCTGGGTTAATGTGTCAAATGAGTGCAAAGTCAAGGGGCTTTTGCTTGGCCTACTTAAGCATTTGATGCCAGGCCTTGAATGCAAATGTAAAGACAATAACGAGGAATGCAAGCAACACATAGACATTTCTAGCTTGAGTGAGGAGGAGTTGAAGGGACTGGTGAGGGAATGCTTGGAGTGGAAAGAGCAAGATTGGGATAAGGTGCAAGATGCTTTTCCGAACAACAACAATGGCAGCAGAATACTGATCACTAGTCGTTTGGAAGAGGTGGCCTTGCATGCTGACTTTGAAATCCCTGTTAGGTCAATACTACACCGATGGGTTGCCGAAGGATTAGGAAGTAGAGACCCATATGATGTCGTCGCAGAAGATTACTTGTACGAGCTCATTGATTGTAGTTTGATCCAAGTTGCAAGAATGAAGATTAGGGGAGGTGTGAAAACATGTTGCATCCATGATCTTCTGCAAGATCTCTGCATATTGAAAGTAGAGAGGATAAGGTTTTTGAAGTTTGCACAGATAGTGACATTCTAA 1911 0.4621 MNSSGGGTLMGFSNNGYYGRSPFTVSQWHELEHQALIFKYMVAGLPVPPDLVLPIQKSFDSISHGFFHHPTLSYCSFYGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVESQTMTLSSSTVTSLTVTGGGGGGGGGGSGTVNFQNLPTNAFGNLQGTDSGTDHTNYHLDSIPYAIPSKEYRYLQGLKSEGGEHCFFSEASGSNKVLQMESQLENTWPSMSTRVASFSTSKSSNDSLLHSDYPQHSFLSGEYASGEHVKEEGQPLRPFFNEWPKSRESWSGLEDERSNQTAFSTTQLSISIPMSSDFSATSSQSPHVEAKLLCGVEDRIQSLKNELEMINVFLKTSKANKDIEKIVVSQIRDVAHLAEDVIDTSVAKVALHKRRSMLGRLLHGVDQARLLHDTDQTVEGRSNESDASTNLHLGSTTLARKVYNNKVKQYFRCSAWVNVSNECKVKGLLLGLLKHLMPGLECKCKDNNEECKQHIDISSLSEEELKGLVRECLEWKEQDWDKVQDAFPNNNNGSRILITSRLEEVALHADFEIPVRSILHRWVAEGLGSRDPYDVVAEDYLYELIDCSLIQVARMKIRGGVKTCCIHDLLQDLCILKVERIRFLKFAQIVTF 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02165 636 Gene3D - 437 557 IPR027417 -
Pumo11g02165 636 CDD RX-CC_like 333 416 IPR038005 -
Pumo11g02165 636 Gene3D - 328 418 - -
Pumo11g02165 636 Pfam NB-ARC domain 437 551 IPR002182 GO:0043531
Pumo11g02165 636 PANTHER GROWTH-REGULATING FACTOR 5 15 321 IPR031137 GO:0005634|GO:0006351|GO:0032502
Pumo11g02165 636 SMART QLQ_2 21 57 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pumo11g02165 636 Pfam Rx N-terminal domain 333 398 IPR041118 -
Pumo11g02165 636 MobiDBLite consensus disorder prediction 124 143 - -
Pumo11g02165 636 ProSiteProfiles QLQ domain profile. 22 57 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pumo11g02165 636 MobiDBLite consensus disorder prediction 115 160 - -
Pumo11g02165 636 Pfam QLQ 22 56 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pumo11g02165 636 Pfam WRC 84 126 IPR014977 -
Pumo11g02165 636 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 438 553 IPR027417 -
Pumo11g02165 636 ProSiteProfiles WRC domain profile. 83 127 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02165 Pumo-Chr11 54062829 54068850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g02165 19 126 GRF Transcription Factor Family AT3G13960 63.393 4.73e-44 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Pumo11g02165 NB-ARC 4.4e-11 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02165 - - gmx:100787226 591.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g02165 11 54062829 54068850 Pumo11g02165 11 54062829 54068850 ECH