Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02154 ATGAAAGATATTTGTAGGAACTTCCAGCGAGGCAGCTGTCAATATGGAGAAAGGTGTAGATATTTACATGTCCAACAACAGCGAAAACCTAATGTTCAGGGGTTTGGAGGACAGAACACTTCTCATCAACAGCAAAATACAAATCCTTTTGGATTTGGGTCTGGCTCTGGCTTTAGCTCACAACAACAGCAGAAGGGTAATCCTTTTGGTTTTGGCACGCAGAACAGCTCCCAGTTAAATAGGGGCTTTCATTCCGAGTACAAACCGAACCAATTCAAGCCTTTTGAAAACAAATGGAATCGACAGTCATCCAAACCCCAGAATGGCGGGAAATCTGATAACAACAGCAAACAAGCAGAGCATATATGCACAGATCCTGAGAACTGCAAGCGCCAGATGGCAGTAGATTTTGAGCAAGAGAAACCGCTTTGGATACTTACATGCTACAGTCATTGCAAAGGTGCTCCTTGTGACATTGTTGGTGATATTAGCTATGAAGAATTGCGGGCATCAGCTTATGAGGATGCTAAGCGTGGGATGAGCTTGCAATCAATAGTTGAGAAAGAGAGAAATATACTAAAATCCAAGTTGGTTGAGTTGGAGAAACTACTTTCTGAACCTTACAAAACACCAATAAATTCTTCTCTTGGCAGTCAAACACCCCAATCTATTGGAGCCAATGCAAATCCATTTGCAACATCTCAAAGTAATGGTCCTTTGTCAGTCTCAAGCTTTAGCCAACTGGGTACTTCATTGAACATGGGTTTTGAAAGGCCATCTGCACCACTAACAAACACTCCAGCACAGCCTAGTTTCTTTGGAAGTGGAGGAAACTCTTTGGCATCCAACGCATCAAACCTAAACAGCAATGGTGTCTTTGGTGTTCAAAGCAACCCCTATTCTACGCCAGTGGATTTGAAAATGTTTCCAGGTTCAACTCAGCAAACATCGACTACCTTCAATAACTCTGGTCCCACTACAATGTTTCAAACAACACCAGATGTCCAGTTGTCAAATATGTCCCAAGTGGAGAGTGCGTCTGTAGATGCCAGTGTTTGGTTAAAAGAGAAATGGAATCCGGGAGAGATTCCAGAAGAAGCTCCTCCTGATACATTTGTACGGTAG 1125 0.4276 MKDICRNFQRGSCQYGERCRYLHVQQQRKPNVQGFGGQNTSHQQQNTNPFGFGSGSGFSSQQQQKGNPFGFGTQNSSQLNRGFHSEYKPNQFKPFENKWNRQSSKPQNGGKSDNNSKQAEHICTDPENCKRQMAVDFEQEKPLWILTCYSHCKGAPCDIVGDISYEELRASAYEDAKRGMSLQSIVEKERNILKSKLVELEKLLSEPYKTPINSSLGSQTPQSIGANANPFATSQSNGPLSVSSFSQLGTSLNMGFERPSAPLTNTPAQPSFFGSGGNSLASNASNLNSNGVFGVQSNPYSTPVDLKMFPGSTQQTSTTFNNSGPTTMFQTTPDVQLSNMSQVESASVDASVWLKEKWNPGEIPEEAPPDTFVR 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02154 374 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 3 25 IPR000571 GO:0046872
Pumo11g02154 374 SUPERFAMILY CCCH zinc finger 3 27 IPR036855 GO:0046872
Pumo11g02154 374 MobiDBLite consensus disorder prediction 31 120 - -
Pumo11g02154 374 PANTHER NUCLEOPORIN-LIKE PROTEIN 2 4 345 - -
Pumo11g02154 374 SMART c3hfinal6 1 25 IPR000571 GO:0046872
Pumo11g02154 374 MobiDBLite consensus disorder prediction 31 85 - -
Pumo11g02154 374 ProSiteProfiles Zinc finger C3H1-type profile. 4 26 IPR000571 GO:0046872
Pumo11g02154 374 MobiDBLite consensus disorder prediction 95 117 - -
Pumo11g02154 374 Gene3D - 1 66 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo11g02154 zf-CCCH 6.7e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02154 K14321 - gmx:100814339 628.632