Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02148 ATGATGGGAAGAACACTATGCAGTGATGAAAGTGGTTTGAAGAAGGGGCCTTGGACCCCAGAAGAGGATAGAATATTGGTGGATCACATTCAGAAACATGGGCATGGGAGTTGGAGAGCACTTCCAAAACTTGCAGGGTTGAACAGGTGTGGGAAGAGTTGCAGGCTAAGGTGGACAAACTATTTGAGGCCTGATATCAAAAGAGGAAAATTCTCTGAGGAAGAAGAGCAACTCATCATAAATTTACATGCAGTTCTTGGGAATAAGTGGTCGGCTATAGCAGGTCATCTGCCAGGTAGGACTGATAATGAAATTAAGAATTTCTGGAACACTCATTTAAAGAAAAAGCTTCTGCAAATGGGGTTAGATCCAGTGACTCATTGTCCAAGATCAGATCATCTTAACCTTCTATCCAATCTTCAACAGTTGCTGGATGCTACAAACATTATGAGTAATTTCACCAACACTTGGGACATTAATGCTCTAAGGCTGCAATCAGATGCCACACAACTAGCCAAACTCCAATTGCTGCAGAACATACTTCAAGTCCTTGGGGCCACTCCTGCCTCAAACTTGGACCTACTCAGTAGTCCTTTTGGACCATCATCTTCACTGCCAGATGGTTTTCTAAATGAAGTTTTAGGATTGAATCAGTCTAAGCTACAAAACCTTTATAATGGTTGTTCAACTGGTTTTCCTTCTCAGAATCAGCCAAATTTCCAAAGCTTTGAAGCCCCTCATCAGCAACAAGCTCTACCAACTGGGAATCACCACATGAATGGAGGAAGCAGCATGAAACCTGAAAAGGTTGATGAACAACTTGATGCCCCATATTCTTCTTCAACACCATTCAATTCTCTTCCAAATCTAATCTCAGCTTCACCTGAATGTTCCACTGTCAAGCAAATGGAAAACAAGGGAAACCCAAATAAGTGCTCTGACCCTTCTTCCACTTCAACCAACTTTGAAATGTGGGGAGATTTCATGTATGAAGAAGTAAGCGATGCTTATTGGAAAGACCTCTTGGACCAAGAGTCTAACCAGTAA 1047 0.4193 MMGRTLCSDESGLKKGPWTPEEDRILVDHIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIINLHAVLGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKLLQMGLDPVTHCPRSDHLNLLSNLQQLLDATNIMSNFTNTWDINALRLQSDATQLAKLQLLQNILQVLGATPASNLDLLSSPFGPSSSLPDGFLNEVLGLNQSKLQNLYNGCSTGFPSQNQPNFQSFEAPHQQQALPTGNHHMNGGSSMKPEKVDEQLDAPYSSSTPFNSLPNLISASPECSTVKQMENKGNPNKCSDPSSTSTNFEMWGDFMYEEVSDAYWKDLLDQESNQ 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02148 348 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Pumo11g02148 348 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Pumo11g02148 348 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 296 - -
Pumo11g02148 348 SMART sant 14 64 IPR001005 -
Pumo11g02148 348 SMART sant 67 115 IPR001005 -
Pumo11g02148 348 FunFam MYB-related transcription factor 14 67 - -
Pumo11g02148 348 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pumo11g02148 348 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Pumo11g02148 348 Gene3D - 14 67 - -
Pumo11g02148 348 Gene3D - 70 117 - -
Pumo11g02148 348 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Pumo11g02148 348 MobiDBLite consensus disorder prediction 235 268 - -
Pumo11g02148 348 MobiDBLite consensus disorder prediction 235 261 - -
Pumo11g02148 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pumo11g02148 348 CDD SANT 70 113 IPR001005 -
Pumo11g02148 348 FunFam Transcription factor MYB39 70 131 - -
Pumo11g02148 348 CDD SANT 17 62 IPR001005 -
Pumo11g02148 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02148 Pumo-Chr11 53848930 53850462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g02148 2 343 MYB Transcription Factor Family AT5G16770 48.603 2.03e-100 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo11g02148 Myb_DNA-binding 4.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02148 K09422 - gmx:547488 592.423