Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02119 ATGGGAGACGAAGAGGAGGAGGAGGTGCTGGGTTGCGCAACCACCGTTTCGGGCCAATCAGCCTCCACCAACAACAGCTTGCCACCTCCCGCCGATAACACACTCCTCAAATTGAACCATCTCGACATACATGCTGATGATGCTGGATCACACGCTTCTGTTGCTGGCAAGAAGAAAAAGAGAGGAGGCCAACGGGCTGTTGGACCTGACAAGAGTGGTAGAGGTCTCCGCCAATTCAGTATGAAAGTGTGTGAGAAGGTAGAAAGCAGGGGAAGAACAACATACAATGAGGTGGCGGATGAGCTTGTTGCTGAATTTTCTGATCCAAGCAATAGTGAATTGTCCCCTGATCAGCAACAATATGATGAGAAAAACATCCGTCGAAGGGTCTATGATGCTCTGAATGTTCTCATGGCAATGGACATTATTTCTAAGGACAAAAAGGAAATCCAATGGAAGGGTCTTCCTCGTACTAGTGTGAATGATATTGAAGAACTAAAGACAGAGCGTCTTGGGCTCAGGAATAGAATTGAAAAGAAAACAGCCTATCTGCAGGAGCTTGAGGAGCAACTCGTAGGTCTTCAGAACCTTATTCAACGAAATGAGCAGTTATATAGCTCAGGAAATCCTCCCAGTGGAGGTGTATCTTTACCTTTTATTCTGGTACAGACACGTCCTCATGCAACTGTGGAAGTGGAAATATCAGAAGATATGCAGCTTGTTCATTTTGATTTCAATAGTACTCCTTTTGAGCTGCATGACGATAATTATGTTCTCAAGGCAATGGAGTTTTGTGAGAGACCACAGGATGATAATATGACACACAATCTTACTGATGGAGGTGAAGGTTCTAGCATGTCGGGCTTGTGTACGCCACAGGCTCCTCCTACAAATCTAAATGTGTCAAATAGGCCTCCAACATCACCTCCTCTCCCTGGCATATTAAAGAGAAATTTGCTGCAGTTGATAGACCGTCATAATAGTTATTCATCAGTACAGCCAAGTCATTCTGTAGGTTAG 1020 0.4461 MGDEEEEEVLGCATTVSGQSASTNNSLPPPADNTLLKLNHLDIHADDAGSHASVAGKKKKRGGQRAVGPDKSGRGLRQFSMKVCEKVESRGRTTYNEVADELVAEFSDPSNSELSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSVNDIEELKTERLGLRNRIEKKTAYLQELEEQLVGLQNLIQRNEQLYSSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMEFCERPQDDNMTHNLTDGGEGSSMSGLCTPQAPPTNLNVSNRPPTSPPLPGILKRNLLQLIDRHNSYSSVQPSHSVG 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02119 339 MobiDBLite consensus disorder prediction 13 32 - -
Pumo11g02119 339 SMART DP_2 161 321 IPR014889 -
Pumo11g02119 339 SUPERFAMILY "Winged helix" DNA-binding domain 74 155 IPR036390 -
Pumo11g02119 339 MobiDBLite consensus disorder prediction 1 34 - -
Pumo11g02119 339 PANTHER TRANSCRIPTION FACTOR DP 23 276 IPR015648 GO:0005667|GO:0051726
Pumo11g02119 339 MobiDBLite consensus disorder prediction 273 314 - -
Pumo11g02119 339 Coils Coil 170 204 - -
Pumo11g02119 339 SUPERFAMILY E2F-DP heterodimerization region 161 275 IPR037241 -
Pumo11g02119 339 PIRSF Txn_factor_DP 6 321 IPR015648 GO:0005667|GO:0051726
Pumo11g02119 339 MobiDBLite consensus disorder prediction 274 301 - -
Pumo11g02119 339 SMART E2F_TDP_2 71 154 IPR003316 GO:0005667|GO:0006355
Pumo11g02119 339 FunFam Transcription factor-like protein DPB 66 159 - -
Pumo11g02119 339 Gene3D - 68 159 IPR036388 -
Pumo11g02119 339 Gene3D Transcription factor DP 160 280 IPR038168 -
Pumo11g02119 339 Pfam Transcription factor DP 162 275 IPR014889 -
Pumo11g02119 339 CDD DP_DD 159 262 IPR014889 -
Pumo11g02119 339 Pfam E2F/DP family winged-helix DNA-binding domain 74 154 IPR003316 GO:0005667|GO:0006355
Pumo11g02119 339 MobiDBLite consensus disorder prediction 47 75 - -
Pumo11g02119 339 FunFam Transcription factor-like protein DPB 160 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02119 Pumo-Chr11 53497367 53500615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g02119 60 272 E2F-DP Transcription Factor Family AT5G02470 52.804 2.81e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Pumo11g02119 DP 7.9e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02119 K04683 - gmx:100800599 564.688