Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02118 ATGAAATGCTGTGATGTGATTTGCAGAGGCGGAGAAGAGGGAATGGCTTACATGTGTGCGGACAGTGGGAACCTGATGGCGATTGCGCAGCAAGTCATCAAGCAGAAGCAGCAGCAAGAGCAGCAACAGCAGCAACAACAACAGAACCACCACCTCAACCCTCTCAACCTTCACCATCCAATTCCATGGAACAACACTCCCCCTCTCGGCTACCCTCTCCCTCCCACCGATTTCCCAGACCCCTTCCAACCCGATCCCCCATTCCACTTCTCTGACCCCCACTCCTTCCGCTTCTCCGACTTCGACTCCGACGACTGGATGGACTCCCTCATCGCCGCCGCCGACACCCCCTCCTGGCACTCCAATGCCGATTTCCCCTTCCCCTCCGATCTCAACCGCCTCATCTATCCTCCCTCCTCCTCCGACACCACCACCACCACCGCACCAATCCCCCTCCAACCCACTCCACCGCCACCGCCACCGCCGCCGCCGCCCCACTCCCCCTCCTCCGACCACCCCCTCCTCAAAGCCCTCACCGAGTGCGCCTCCCTCGCCGAAACCCAACCGGATCAAGCCGCCGAATCCCTAACCCGTTTGCGAAAATCCGTTTCCCAGCACGGAAACCCCACTCAGCGAGTCGCCTTTTACTTCTGCCAGGCCCTCACCCGCAAAATATGGGCCGAGAAAGAAAAGCTGGAGCCCAATACCACTTCTTCGGAGGAGCTAACACTCTCTTACAAAGCCCTCAACGACGCCTGCCCTTACTCCAAGTTCGCTCACTTAACCGCCAACCAAGCCATCCTCGAAGCCACCGAAAACGCCTCCAACATCCACATCGTCGACTTCGGCATCGTCCAAGGGATTCAATGGGCCGCACTCTTGCAAGCATTCGCCACTCGCTCCTCTGGAAAGCCCAATAAGATCAAAATTTCCGGAATACCCGCCATGGCCCTTGGTGCCTCTCCCGGCCCATCTCTCTCCGCCACCGGCAACCGCCTCTCCGAGTTCGCCAAGCTTCTCGACTTGAATTTCGAGTTCACGCCTATCCTCACTCCCATTCACGAGCTCAACCACAACAGCTTTTGCATTGACCCAAACGAGGCCTTAGCTGTCAACTTCATGCTTCAGTTGTATAACCTCTTGGACGAGCCAGAGCCAGAGCCACCAACCGCGGTTGACACTGCGCTCAGGTTGGCTAAGTCTCTGAACCCCACAATTGTGACTCTTGGCGAGTATGAAGCAAGCTTGACACGTGTCGGGTTTGTCAACCGGTTCAAGTCAGCGTTTAAGTACTTCTCTGCCGTGTTTGAGTCTCTGGAGCCTAACTTGGCTGCTGACTCGCCGGAGAGGTTTCAGGTGGAGAGTCTTCTGCTCGGGCGGCGAATCGCGGCGGTTATTGGGGTGAGGGAGAGCATGGAGGACAAAGAGCAGTGGAGGGTTCTGATGGAGCGTGCTGGTTTTGAATCAGTGAATCTCAGCCATTATGCAATTAGTCAAGCTAGGATTCTTCTGTGGAATTATAGCTACAGTTCTCTGTTTTCGCTGGTTGAATCTACACCGGGTTTTTTGTCTCTGGCTTGGAAAGATGTTCCTCTCCTGACTCTGTCCTCATGGCGTTAA 1620 0.5586 MKCCDVICRGGEEGMAYMCADSGNLMAIAQQVIKQKQQQEQQQQQQQQNHHLNPLNLHHPIPWNNTPPLGYPLPPTDFPDPFQPDPPFHFSDPHSFRFSDFDSDDWMDSLIAAADTPSWHSNADFPFPSDLNRLIYPPSSSDTTTTTAPIPLQPTPPPPPPPPPPHSPSSDHPLLKALTECASLAETQPDQAAESLTRLRKSVSQHGNPTQRVAFYFCQALTRKIWAEKEKLEPNTTSSEELTLSYKALNDACPYSKFAHLTANQAILEATENASNIHIVDFGIVQGIQWAALLQAFATRSSGKPNKIKISGIPAMALGASPGPSLSATGNRLSEFAKLLDLNFEFTPILTPIHELNHNSFCIDPNEALAVNFMLQLYNLLDEPEPEPPTAVDTALRLAKSLNPTIVTLGEYEASLTRVGFVNRFKSAFKYFSAVFESLEPNLAADSPERFQVESLLLGRRIAAVIGVRESMEDKEQWRVLMERAGFESVNLSHYAISQARILLWNYSYSSLFSLVESTPGFLSLAWKDVPLLTLSSWR 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02118 539 MobiDBLite consensus disorder prediction 150 170 - -
Pumo11g02118 539 MobiDBLite consensus disorder prediction 134 149 - -
Pumo11g02118 539 Coils Coil 26 49 - -
Pumo11g02118 539 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 146 533 IPR005202 -
Pumo11g02118 539 Pfam GRAS domain family 175 539 IPR005202 -
Pumo11g02118 539 MobiDBLite consensus disorder prediction 134 173 - -
Pumo11g02118 539 ProSiteProfiles GRAS family profile. 165 539 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02118 Pumo-Chr11 53477822 53480432 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g02118 15 539 GRAS Transcription Factor Family AT5G66770 56.419 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pumo11g02118 GRAS 6.7e-104 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02118 - - vum:124844288 756.903