Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02066 ATGGGGCAGCTCCAAAAGGAAGAGATAAATGTTAATAATAGTTCTGTAGAAAATGACAGTGTTAACGGTAATTTGAATCATGTCTCTGACGCTGTCAAATTGGAGGAAATTCACTTTCCTGCTGCCCATGCAGCTAAAGATGGTTCTTTGTGTTTGGTTGAGGAAAATGGAGGTGATGATGGCAAAGAACATGTGGTAGCTATTGATTCTCATCAGATTTCAAATGCAATTTCTGTTAGGGATTCTGATTCTGTAGAGGCTCAGCAAGTTGATTGTACTTCTGAAGGTGGTGTTGCCATAATTCATGAACACCAAGATGATCCAGGAAGTCCATGCAAACAAGTAAATAGCCGAAGGAAAAGAAGAAAAGTATCAGATAATCCAGAAGCCACACCAGAGACAGTTTTAAGGAGGAGTTCTCGTCGGGCATCAGCTAGAAAACGGGTTTCAAGCACCGTACTAGTGGAGGTGACTGATGATCCTTTGTTGTCCTTGGAAACCAGTGCCTTAACAGAGGAAAAACCTCTAATCCCCGATTCTCAAAAATATGAGCAATGCAATGATCCTCTTCCAAAGCTGCAATTGCCCCCGTCTTCTACAAATTTGAATTTAGATGGCGTTCCTGTTCTTGAACTTTTTTCCATTTATGCTTGTTTAAGATCATTCAGTACTTTATTATTTTTGAGTCCATTTGAGTTGGAGGATCTTGTAGTTGCACTGAAGTCTGAAATGCCAAGTATATTATTTGACAGCATTCATGTTTCTATTTTGCAAACTCTGAGAAAGCATTTGGAATACCTTTCCAACGAGGGTTGCCAATCTGCATCCAATTGCCTGAGGAATCTTAACTGGGATTTTTTGGACCTGGTCACATGGCCTATTTTCATGGCCGAGTACCTTCTGATTCATGGCTCAGGATTTAAAACTGGTTTTGATATTAAACATCTAATGTTCAGAACTGATTACTACAAACAACCTGTAATTGTGAAGGTTGAGATTCTTCAGTACCTATGTGATGATATGATTGAATCGGAAGCCATAAGGTCAGAGCTTAATAGAAGATCTTTGGTAACTGAGACTGATATGGGTTTTGATCAGAATATGTATTTTGACACTGGCAAGAAAAGAAGAACTGTAATGGATGTGTCTGGTGGCTCTTGCTTGACTGAGGAGAATGTGGATGACACAACTGACTGGAACAGTGACGAATGTTGCCTGTGCAAGATGGATGGTAGTTTAATATGCTGTGATGGTTGCCCTGCAGCATTCCACTCAAGATGTGTGGGAATTGCCAGTGACAATCTCCCTGAAGGTGACTGGTATTGCCCCGAGTGTGGAATTGGCAAACACATGGCTTGGATGAAATCGCGAAGGTCTCTTCGAGGAGCAGACTTGTTAGGGATGGATCTGGATGGCCGTCTCTATTTTAACAGCTGTGGTTACCTGTTAGTGTCAAACTCATCTGAAGCAGGGTCATTGTTCAATTACTACCACAGAAATGATCTACATGTAGTAATTGAAACTCTAAAATCTATGGATCTTTTATATGAAGGCATACTAATGGCTATCTATAAGCATTGGGATATCCGTGCTAATTTGAGTGTGGGGGATAGTGTCTTTAATCAAAGTTCCTGCAAGAACATGCAGATGAAGGGAGAATATTCTACTATGCATACCTCTTTAGCACCTTTTACTTCAGAGACATGTTTGGACAAGAATCGGGCTAATGATCAAAGAAAGTTGGATGAAAATTTAACTATTGACGGTTGTATGAATCTTGGCCAAGAGTTTCCAAAAGCTGGGAACCGCCTAGACTCAACGACCACCATAGAAAGTCCTTGTGTTGCTTCAGATGGATCAGCTGATACCACACCGATTAGAACAGGCATTGACAATGTTCAAATAAATGGGCTCAATGATTCCAATAGATGTGATGAATCCTTGAATCAGCCAGGAATACCAGAAAGACGCCATCCTGTTGGTGACTGTTCTTTGACATCTTCCAGCTTAGATGTGGGACGTAAAATAAACTTAAGATCTGTAGGTGCTAGCAGTACCCCCTCCATGGACAATAAGGATACTTCAGAGGTACCTCATGGAATTGACTACATAAACTATTACAGCTTTGCCCGAACGGCTTCATTTGTAGCACAGGAGTTGATGTGTAAGTCACCAGAAAAGATGAATAAGATTCTTGCAATGTCTGAAGAAGAAATTATTTCAGACCAAGCAAAAGTCATTATGAAGAAATCTACTAACTTTTGTTGGCCAAGTATTCAGAACCTGAATGCAGCTGCCCACAAAGAAAAATGTGGGTGGTGCTTTACTTGCAAAGTTGAAAATGAAGACAGGGATTGCTTGTTTAATTCTGTGGTGAAGCCTGTTTGGGAAGTGTCTAATAGTAATTTAGTTGGGCTTCAACCCAGGAAGATCCAGAATGGACGTCTTAGAGATATCATATGTCTTATATTCTCTCTTGAGGTTCGATTACGTGGGCTTTTGTTGGGTCCATGGTTGAATCTGCATCAAACTAATCTTTGGCATAAGGATCTTTTGAAGACATCTGATTTTCTTCCTGTTAAACGATTATTGCTTCTGTTAGAATCCAATTTGCGGCTTCTTGCACTTTCAGCAGATTGGTTAAAGCATGTGGATTCTGTTGCTACAATGGGATCTGCTACTCATATTGTGGTCAGTTCATCACGCACATCTTCAAGGCATGGTATTGGAAGGAAAAAGGGCAGGTATTCAGATATTGAAACCAGTTCATCTTCAAACACTGCTAGTGGTTTGGGGATGTACTGGTGGAGAGGTGGCAGGCTTTCCCGAAAATTGTTTAATTGTAAGGCTTTGCCTCACTCCCTGGTTACCAAGGCTGCTAGACAAGGTGGGTGTAGGAAGATACCAGGCATTTTATATCCTGAGAATTCAGATTTTGCACGGAGAAGCAGATTTATTGCCTGGCGAGCTGCTGTTGAGATGTCAACAAGTGCTGAGCAGCTTGCTTTACAGGTTAGAGAGCTTTATTCAAACATAAGGTGGCATGATATTGAGAACAACCATTCCCTATATGTGTTGGACAAGGAATCTAAAAAATCAGTCAGGTTGTTCAAAAAATCAATCGTACGCAGGAAGTGCACTGAAGGGCAATCTGTGAAATACCTTATTGATTTTGGGAAGAGAAGGGCTATTCCAGATGTTGTTATTAAACATGGTTCTTTGTTGGAACAATCCTCTAGTGAGAGAAAAAAATATTGGCTGGAGGAGTCTTATGTTCCATTGCATCTTCTAAAGAATTTCGAGGAAAAAAGAATTGTCCGCAAGTCCACTGATAAGAAACTTGGAAAAATTCTCGAGATTGGTAGAGTAAACAAGAAAATTCCTCAACAAAGGGGATTTTCATATTTGTTTAACAGATTGGAAAGATCTGATTGTCATCAGTGCGGGCACTGCAACAAAGATGTTGCAATGAGGGATGCTGTGAGGTGCCTTCATTGCAAAGGATATTTCCACAAGAGGCATGTCAGAAAATCAGGTGGCACAAGAACTACTGGAAGCACATATTCATGTCACAGATGTCAGGATGGGCTGCATGCAAAGACTAATACTAATAAAAGGAAAGTTGACTCAAAACTGCAGAAGATTCAAGCAAAGAAACGTAAAACTGTGCCTTCAGTTTGTAAATCAGTGAACCTCAAGGGCAATAAAAAGGCATTGAGTAAGATACGACAGGTGAGATCTCGAAACAGTAAGAATATCCCATCAAGTGTACCTCTTCGCCGTTCTACTAGGAAGGCCAAATCCTTGTATATGCAAAGTCAATTGAATGGAGGACATAAAAAAGGAAAGTCAAGTAAAAAGAATGTGGGACGTAAAAAGGGAAAGCAAAGTAAATCCAAGAAGGTGACCTCTCTAAAGTCCAAGGAAACTACTGGTCAATATAAGTTGGCAGTTACTACTGCACGTAAGAAGAGAACAATAATCTGTAACAGTTATTGGCTTAATGGTCTTCAGTTGTCTAGAAAGCCAAATGATGCACGAGTAATGCTGTTTAAAGAGAAAAAGCGTGTTGTCTCCTCTGAAGATTTTTCTGGCTCTCTCGATTATCCTAAATGCTGCCTTTGTTGTGGAAATGAATGCACCTTGAACTATATTGCGTGTGAAATCTGTGGAGATTGGTTTCATGGTGATGCTTTTGGGCTCAATGTGGAGAATGCCAGACAACTTATTGGATTTAAGTGCCATGTCTGTCTTGATAGAACTGCTCCAGTCTGTCCCCATATGAAGATTAATGCATTGCCTCACACTGAAAGCAATGCTGCAATTGAGTGTGCAGAGGAGTTATCTAATCCTGTTTCTCTCCAACCTTTAAGTGAGGTTTGA 4383 0.4041 MGQLQKEEINVNNSSVENDSVNGNLNHVSDAVKLEEIHFPAAHAAKDGSLCLVEENGGDDGKEHVVAIDSHQISNAISVRDSDSVEAQQVDCTSEGGVAIIHEHQDDPGSPCKQVNSRRKRRKVSDNPEATPETVLRRSSRRASARKRVSSTVLVEVTDDPLLSLETSALTEEKPLIPDSQKYEQCNDPLPKLQLPPSSTNLNLDGVPVLELFSIYACLRSFSTLLFLSPFELEDLVVALKSEMPSILFDSIHVSILQTLRKHLEYLSNEGCQSASNCLRNLNWDFLDLVTWPIFMAEYLLIHGSGFKTGFDIKHLMFRTDYYKQPVIVKVEILQYLCDDMIESEAIRSELNRRSLVTETDMGFDQNMYFDTGKKRRTVMDVSGGSCLTEENVDDTTDWNSDECCLCKMDGSLICCDGCPAAFHSRCVGIASDNLPEGDWYCPECGIGKHMAWMKSRRSLRGADLLGMDLDGRLYFNSCGYLLVSNSSEAGSLFNYYHRNDLHVVIETLKSMDLLYEGILMAIYKHWDIRANLSVGDSVFNQSSCKNMQMKGEYSTMHTSLAPFTSETCLDKNRANDQRKLDENLTIDGCMNLGQEFPKAGNRLDSTTTIESPCVASDGSADTTPIRTGIDNVQINGLNDSNRCDESLNQPGIPERRHPVGDCSLTSSSLDVGRKINLRSVGASSTPSMDNKDTSEVPHGIDYINYYSFARTASFVAQELMCKSPEKMNKILAMSEEEIISDQAKVIMKKSTNFCWPSIQNLNAAAHKEKCGWCFTCKVENEDRDCLFNSVVKPVWEVSNSNLVGLQPRKIQNGRLRDIICLIFSLEVRLRGLLLGPWLNLHQTNLWHKDLLKTSDFLPVKRLLLLLESNLRLLALSADWLKHVDSVATMGSATHIVVSSSRTSSRHGIGRKKGRYSDIETSSSSNTASGLGMYWWRGGRLSRKLFNCKALPHSLVTKAARQGGCRKIPGILYPENSDFARRSRFIAWRAAVEMSTSAEQLALQVRELYSNIRWHDIENNHSLYVLDKESKKSVRLFKKSIVRRKCTEGQSVKYLIDFGKRRAIPDVVIKHGSLLEQSSSERKKYWLEESYVPLHLLKNFEEKRIVRKSTDKKLGKILEIGRVNKKIPQQRGFSYLFNRLERSDCHQCGHCNKDVAMRDAVRCLHCKGYFHKRHVRKSGGTRTTGSTYSCHRCQDGLHAKTNTNKRKVDSKLQKIQAKKRKTVPSVCKSVNLKGNKKALSKIRQVRSRNSKNIPSSVPLRRSTRKAKSLYMQSQLNGGHKKGKSSKKNVGRKKGKQSKSKKVTSLKSKETTGQYKLAVTTARKKRTIICNSYWLNGLQLSRKPNDARVMLFKEKKRVVSSEDFSGSLDYPKCCLCCGNECTLNYIACEICGDWFHGDAFGLNVENARQLIGFKCHVCLDRTAPVCPHMKINALPHTESNAAIECAEELSNPVSLQPLSEV 1460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02066 1460 SMART testlast3 206 266 IPR018501 -
Pumo11g02066 1460 MobiDBLite consensus disorder prediction 1280 1301 - -
Pumo11g02066 1460 MobiDBLite consensus disorder prediction 1245 1279 - -
Pumo11g02066 1460 SUPERFAMILY FYVE/PHD zinc finger 1369 1423 IPR011011 -
Pumo11g02066 1460 Pfam PHD-finger 404 445 IPR019787 -
Pumo11g02066 1460 ProSiteProfiles Zinc finger PHD-type profile. 401 448 IPR019787 -
Pumo11g02066 1460 MobiDBLite consensus disorder prediction 102 143 - -
Pumo11g02066 1460 SUPERFAMILY FYVE/PHD zinc finger 386 445 IPR011011 -
Pumo11g02066 1460 ProSitePatterns Zinc finger PHD-type signature. 404 445 IPR019786 -
Pumo11g02066 1460 MobiDBLite consensus disorder prediction 1237 1306 - -
Pumo11g02066 1460 SMART PHD_3 1147 1194 IPR001965 -
Pumo11g02066 1460 SMART PHD_3 1372 1418 IPR001965 -
Pumo11g02066 1460 SMART PHD_3 403 446 IPR001965 -
Pumo11g02066 1460 Pfam DDT domain 210 262 IPR018501 -
Pumo11g02066 1460 CDD PHD1_AIRE 403 445 - -
Pumo11g02066 1460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1365 1424 IPR013083 -
Pumo11g02066 1460 PANTHER PHD FINGER FAMILY PROTEIN 71 1423 - -
Pumo11g02066 1460 ProSiteProfiles DDT domain profile. 206 266 IPR018501 -
Pumo11g02066 1460 MobiDBLite consensus disorder prediction 1 23 - -
Pumo11g02066 1460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 389 462 IPR013083 -
Pumo11g02066 1460 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 330 352 IPR028942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02066 Pumo-Chr11 52718534 52729285 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g02066 8 1434 PHD Transcription Factor Family AT5G12400 42.593 0.0 1047
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Pumo11g02066 DDT 1.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02066 - - gmx:100800973 2648.23