LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo11g02055	ATGGCTTTCTTTATCTTCTCCTTCCTCTTCCTTCTTGTTTCATCTGCCACTGCTTGTGATCGCTGCTTGCACCAATCCAAGGCTTCCTATTTCTCCAAAGCTTCTGCTCTTTCGTCTGGGGCATGTGGGTATGGCTCTTTGGCACTAGACATAAGTGGTGGACACCTTGCAGCTGGTGTGACTTCTCTCTTCAAAAATGGAGCCGGTTGTGGTGCCTGCTTTCAGATAAGATGCAAGAACCCAACTCTCTGCAGCAAAGAAGGCACCAGGGTGGTATTGACTGATCTTAATCACAATAATCAAACTGATTTTGTGCTCAGCAGCAGAGCCTTTGCGGCCATGGCTCAAAAGGGTATGGGCCAACAAATATTGAAACTTGGCATTGTTGACATTGAATACAAGAGGGTACCTTGTGATTACAAAAAACAGAATTTGGCCGTCCGTGTAGAAGAATCAAGCAAGAAGCCTGATTACTTAGCAATTAAATTTTTGTATCAAGGGGGACAAACAGAGATAGTAGCCGTTGATGTGGCTCAGGTTGGGTCTTCAAATTGGAGCTTCATGAGCAGAAACCACGGGGCAGTGTGGGACACAAGCAGGGTACCCGAAGGTGCATTGCAATTTCGGATAGTGGTAACAGCAGGGTATGATGGGAAGTGGATTTGGGCAAAGAAGGTCCTACCTGCTGATTGGAAAAATGGAGTCGTATATGACTCTGGCCTTCAGATTACAGACATTGCACAAGAGGGTTGTTCCCCCTGCGATGATGGCACCTGGTCATGA	783	0.4649	MAFFIFSFLFLLVSSATACDRCLHQSKASYFSKASALSSGACGYGSLALDISGGHLAAGVTSLFKNGAGCGACFQIRCKNPTLCSKEGTRVVLTDLNHNNQTDFVLSSRAFAAMAQKGMGQQILKLGIVDIEYKRVPCDYKKQNLAVRVEESSKKPDYLAIKFLYQGGQTEIVAVDVAQVGSSNWSFMSRNHGAVWDTSRVPEGALQFRIVVTAGYDGKWIWAKKVLPADWKNGVVYDSGLQITDIAQEGCSPCDDGTWS	260

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo11g02055	260	ProSiteProfiles	Expansin, Cellulose-binding-like domain profile.	157	239	IPR007117	-
	Pumo11g02055	260	FunFam	Expansin-like A2	140	244	-	-
	Pumo11g02055	260	Gene3D	-	140	244	IPR036749	-
	Pumo11g02055	260	SUPERFAMILY	PHL pollen allergen	144	239	IPR036749	-
	Pumo11g02055	260	Gene3D	-	12	139	IPR036908	-
	Pumo11g02055	260	PANTHER	EXPANSIN-B3	12	242	-	-
	Pumo11g02055	260	PRINTS	Expansin/Lol pI family signature	60	78	IPR007118	GO:0005576
	Pumo11g02055	260	PRINTS	Expansin/Lol pI family signature	126	142	IPR007118	GO:0005576
	Pumo11g02055	260	PRINTS	Expansin/Lol pI family signature	38	56	IPR007118	GO:0005576
	Pumo11g02055	260	PRINTS	Expansin/Lol pI family signature	185	199	IPR007118	GO:0005576

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo11g02055	Pumo-Chr11	52582022	52584638	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo11g02055	16	260	Expansin Gene Family	AT4G38400	68.421	6.73e-117	333

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo11g02055	-		-	gmx:100305884	494.967

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