Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02053 ATGATTAGTTCCAAAAAGATCATCCAAATGGCTTGGAAGTGGCAGAAAGAGGTAACAAATTACCAAATGAAGAGAATCCTATGGCCAAAGATTCAAGAAAATGCAGCAAAACAAGAAGGTTGCAGCGTGTGGACAAAGGCAGAGAAGGGTCACTTTGTTGTGTACAGCACAGATAAGAAGCGCTTTGTGCTTCCTTTGTTGTATTTGAACAACAACATTTTCAGAGAGCTTTTCAAATTGGCAGAAGAGGAGTTTGGTCTTTCTAGCAACGTGCCCCTAACGTTGCCTTGTGAAGCCACATTAATAGAGTACGTAATAATGTTGATCCAGAGAAACGTAACTAAGGATCTGGAGGAAGCTGTGTTAATGTTCATAGCTACTAGTCGATGCCAATCACATGTTGATCTTCATCCTGAAAGAACCAATCAACATTTGCTTTGCAGCTACTAA 450 0.4022 MISSKKIIQMAWKWQKEVTNYQMKRILWPKIQENAAKQEGCSVWTKAEKGHFVVYSTDKKRFVLPLLYLNNNIFRELFKLAEEEFGLSSNVPLTLPCEATLIEYVIMLIQRNVTKDLEEAVLMFIATSRCQSHVDLHPERTNQHLLCSY 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02053 149 PANTHER AUXIN-RESPONSIVE FAMILY PROTEIN 1 141 IPR003676 GO:0009733
Pumo11g02053 149 Pfam Auxin responsive protein 6 109 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02053 Pumo-Chr11 52549177 52549626 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g02053 24 117 Calmodulin-binding Proteins AT5G20810 32.653 6.85e-11 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02053 - - gmx:100803097 236.113