Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02050 ATGGAAGCTATATTCGTCACCAAACCCGCTTCTCATTCTCACCCCTTAACTAAACTCTCTCCAAACCCCAAACACATCTTCCCACCCCACCAACAATCCTTTCTCAACATCCGCCACATGCCCACGCGCTTTCACGCCGTCTGCGCCGCAATCCAAAACCAACAACAAGAAGCAGCAGCAGCTTCCAAAGACACCGAAGATGAGTCCTACGGTGAAGTCAAAGGCATCATCGGAAGCAGAGCGCTCGACGGCGCCACCGGAATGGAGTACCTCATCGAGTGGAAGGACGGTCACGCACCCTCCTGGGTTCCCGCCGACTTCATAGCCAAAGACGTCGTCGCCGAATACGAGACTCCGTGGTGGACCGCCGCCAAGAAAGCCGACGAGTCCGCGTTGAAGAACCTCATCCACTCCGACGACGGCCGCGACGTCGATGCCGTGGACGCCGACGGCCGAACCGCGCTCCTCTTCGTCGCCGGACTCGGCTCGGAGCCGTGCGTGAAGCTGCTGGCGGAGTCCGGCGCGAATCTGGACCACCGCGACCGGAGCGGAGGCCTCGCGGCGCTGCACATGGCGGCGGGGTACGTCAGGCCCGGCGTGGCGAAGGTTCTCTTGGATCTCGGCGCGGATCCCGAGGTGGCGGACGACCGCGGGAGAACGGCGCTGGATCTGGCGAGGGAGATTCTGAAGGTGACGCCGAAGGGGAATCCGATGCAATTCGGGCGCAGGATTGGACTGGAAGGTGTGATTAGGGTTTTGGAAGGGGCTGTGTTCGAGTACGCGGAGGTGCAGGAGATTCTGGAACGGAGAGGGAAGGGTGAGAATTTGGAGTACCTTGTGCGGTGGAAGGACGGTGGTGCGAACGAATGGGTGAAGGCGAAGTTTGTGGCGGAGGATTTGGTGAAAGACTACGAGGCTGGCCTTGAGTACGCCGTGGCTGAGGCCGTGCTTGCCAAAAGGGTCGCGGATGAAGGGACGCCGGAGTTTTTGGTTAAATGGGCCGATTTGGATGAGCCCACGTGGGAGCCCGAGGAGAATGTGGACCCCGAGCTTGTCAAAGCGTTCGAGGAAAGTAACAACCAGGCCCAGCCCAGTAGTAATGGGCCTCCCGTGGTCGTTTCCAATCAGGATAGCACTAGCCCGTGA 1146 0.6012 MEAIFVTKPASHSHPLTKLSPNPKHIFPPHQQSFLNIRHMPTRFHAVCAAIQNQQQEAAAASKDTEDESYGEVKGIIGSRALDGATGMEYLIEWKDGHAPSWVPADFIAKDVVAEYETPWWTAAKKADESALKNLIHSDDGRDVDAVDADGRTALLFVAGLGSEPCVKLLAESGANLDHRDRSGGLAALHMAAGYVRPGVAKVLLDLGADPEVADDRGRTALDLAREILKVTPKGNPMQFGRRIGLEGVIRVLEGAVFEYAEVQEILERRGKGENLEYLVRWKDGGANEWVKAKFVAEDLVKDYEAGLEYAVAEAVLAKRVADEGTPEFLVKWADLDEPTWEPEENVDPELVKAFEESNNQAQPSSNGPPVVVSNQDSTSP 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02050 381 ProSiteProfiles Ankyrin repeat region circular profile. 184 216 - -
Pumo11g02050 381 SMART chromo_7 310 360 IPR000953 -
Pumo11g02050 381 SMART chromo_7 259 309 IPR000953 -
Pumo11g02050 381 SMART chromo_7 69 121 IPR000953 -
Pumo11g02050 381 ProSiteProfiles Ankyrin repeat profile. 184 216 IPR002110 GO:0005515
Pumo11g02050 381 Pfam Chromo (CHRromatin Organisation MOdifier) domain 313 357 IPR023780 -
Pumo11g02050 381 CDD CD3_cpSRP43_like 308 356 IPR030300 -
Pumo11g02050 381 SUPERFAMILY Ankyrin repeat 116 227 IPR036770 -
Pumo11g02050 381 Pfam Ankyrin repeats (many copies) 173 225 IPR002110 GO:0005515
Pumo11g02050 381 ProSiteProfiles Ankyrin repeat region circular profile. 150 182 - -
Pumo11g02050 381 SUPERFAMILY Chromo domain-like 259 306 IPR016197 -
Pumo11g02050 381 Gene3D - 307 359 - -
Pumo11g02050 381 MobiDBLite consensus disorder prediction 340 381 - -
Pumo11g02050 381 ProSiteProfiles Chromo and chromo shadow domain profile. 311 367 IPR000953 -
Pumo11g02050 381 ProSiteProfiles Ankyrin repeat profile. 150 182 IPR002110 GO:0005515
Pumo11g02050 381 SUPERFAMILY Chromo domain-like 309 362 IPR016197 -
Pumo11g02050 381 SUPERFAMILY Chromo domain-like 66 120 IPR016197 -
Pumo11g02050 381 SMART ANK_2a 115 146 IPR002110 GO:0005515
Pumo11g02050 381 SMART ANK_2a 150 179 IPR002110 GO:0005515
Pumo11g02050 381 SMART ANK_2a 184 213 IPR002110 GO:0005515
Pumo11g02050 381 Gene3D - 115 256 IPR036770 -
Pumo11g02050 381 MobiDBLite consensus disorder prediction 356 381 - -
Pumo11g02050 381 Gene3D - 67 114 - -
Pumo11g02050 381 Gene3D - 257 306 - -
Pumo11g02050 381 PANTHER MYOTROPHIN 49 248 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g02050 135 225 CAMTA Transcription Factor Family AT5G09410 38.384 4.81e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02050 K12271 - gmx:100818382 686.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g02050 11 52521605 52522750 Pumo11g02050 11 52521605 52522750 ECH