Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02039 ATGGATTGTACAGCTGCAAGAAAGACACAAAAGGCTGACCGAGAAAAGCTAAGGAGGGATCGACTCAATGAACAGTTTGTAGAACTGGGCAACATTTTAGACCCTGATAGGCCCAAAAATGACAAAGCAACCATTCTAGGTGATACGATTCAATTGCTAAAGGACGTTACTTCTCAAGTCAGTAAACTTAAAGATGAATATGCTACACTAAATGAAGAATCTTGTGAGTTGGCTCAGGAGAAAAATGATCTCAGAGAAGAGAAGGCTTCTCTTAAATCGGATATTGAGAAGTTGAATAATCAGTATCAGCAACAGCTCAGGACTCTGTCTCCATGGACTGCAATGGATCATTCAGTGCCATTGCCAATACCTCCTTCTCCAATTGCCATGCAGCCATACCCCTTCTATGCTACTCAACATTCTGCAATCATTCCTAACCCTTGTTCAACATTTGTTCCATATTTAGTCCCCAATACCCTTGTTGAACAGCAATGCACCCAGCACATATCCCCACCGCTTCAGCCAGGTTTTCAGTCCCATGTGTCAGGAAAACAAGAGTCAAGAAACAAATCATCCAAGGAGAGCAAGGCTGAAAAACATGAGGATTCTAATGATGTCATTACGGACCTGACTCCTGGGTCTTCTGCAGATCAGAATTTGTTATCTGGACAAAGAAAATCTAGCAAGTTGTCAAGGAAGGAAAGCAGTTGCACTGAAGTGAGTTCGTTAGGTAGGTGTTCTTCGTCTTGTAGCGCTCAGGATAGTTCATCAAGTAGTGTAGTTCACGAGCACAGAGGCTAA 801 0.4257 MDCTAARKTQKADREKLRRDRLNEQFVELGNILDPDRPKNDKATILGDTIQLLKDVTSQVSKLKDEYATLNEESCELAQEKNDLREEKASLKSDIEKLNNQYQQQLRTLSPWTAMDHSVPLPIPPSPIAMQPYPFYATQHSAIIPNPCSTFVPYLVPNTLVEQQCTQHISPPLQPGFQSHVSGKQESRNKSSKESKAEKHEDSNDVITDLTPGSSADQNLLSGQRKSSKLSRKESSCTEVSSLGRCSSSCSAQDSSSSSVVHEHRG 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02039 266 Coils Coil 5 25 - -
Pumo11g02039 266 Coils Coil 53 108 - -
Pumo11g02039 266 MobiDBLite consensus disorder prediction 186 206 - -
Pumo11g02039 266 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
Pumo11g02039 266 CDD bHLH_AtILR3_like 11 85 - -
Pumo11g02039 266 MobiDBLite consensus disorder prediction 234 259 - -
Pumo11g02039 266 Gene3D - 4 84 IPR036638 GO:0046983
Pumo11g02039 266 MobiDBLite consensus disorder prediction 171 185 - -
Pumo11g02039 266 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 74 IPR036638 GO:0046983
Pumo11g02039 266 PANTHER TRANSCRIPTION FACTOR BHLH121 2 263 IPR044579 GO:0003700|GO:0006879
Pumo11g02039 266 MobiDBLite consensus disorder prediction 207 226 - -
Pumo11g02039 266 Pfam Helix-loop-helix DNA-binding domain 7 55 IPR011598 GO:0046983
Pumo11g02039 266 SMART finulus 12 62 IPR011598 GO:0046983
Pumo11g02039 266 MobiDBLite consensus disorder prediction 171 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02039 Pumo-Chr11 52453184 52454748 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g02039 1 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 55.159 8.02e-83 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo11g02039 HLH 1.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02039 - - gmx:100817000 419.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g02039 11 52453184 52454748 Pumo11g02039 11 52453184 52454748 ECH