Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g02030 ATGTCTACTCATAGAACTGATGTAACAACAGAAGCATCACATGCCAGTAATTCTAGTTCAAATAAAATGGATGCGCCTAAAGTTGCCAGACGTGGAAGACCAAAGAAAACAAAGGCTAATAAAACGGGTAAATTTGATTTGACAGATCTTCAATGGACCAGTGATATTCCAGAGTGTCCAGAATACCACCCATCAGAGGAGGAGTTTGAGGATCCTTTCATCTATCTACAGAAGATTGCCCCAGAGGCATCTAAGTTTGGCATATGTAAAATCGTTTCTCCTATTGTTGCCTCTGTTCCTGCTGTTGACGTCTTAACCAAAGAGAAAAAGGACTTCAAGTTTGAATGTTTTGTACAGCCTCTCCGGCTTCCTCGGTGGAGTAAGAAAGATAAAATAATCTTTTCTATGAGTGAAAGAAACTACACGTATAATGAATTTGAGGCTCATGCAAATGAGGCTTTCCACAGTAGATTTCACAGTTCTGGGGATCTTTCATCTTCATATTTGGAAAAGGAGTTCTGGCGTGAGATGGCACGTGGAGGAAAGAGAACGGTTGAATATGGAGTAAATATTGAGGATAGTGCCTTCTCAAGTGATCCTAATGACAAACTAGCAACAAGTAAATGGAATTTGAAGAATTTCTCACGGCTGCCACAATCCACATTGCGTTTAATTGACATAGAAATGCCAGGAGTAACTGATCCGATGCTTTACATCGGGATGCTGTTCAGCATGTTTGCATGGCATGTAGAAGATCAATATCTGTACAGCATAAATTATCATCATTGTGGTGCAAATAAGATTTGGTATGGCGTGCCTGCAAATGCGGCCTCTCAATTTGAAAATGTGGTCTTAAATAATGTGTATTGCAATGAAATCTTATCAGAACATGGAGAGGATGGGGCTTTCCAACTTCTTAGACACAAAACAACCATGTTTCCTCCGAATATCTTGCTACAAAATGATGTGGAAGTTTACAAGGCTGTCCAGAAGCCAGGAGAGTTTGTCATCACCTTTCCTAGAGCATATCATGCTGGATTCAGTACTGGTTTTAACTGTGGAGAAGCAGTAAATTTTGCAACTGGTGATTGGTTTCCACTAGGGGCTGCAGCTAGTAAGCGTTATGCCCATCTCAGAATATGTCCTGTAATTGCATACGAGGAGCTTCTTTGTAAAGAGGCAATGCAAATTTATAAGTCCTTAAAAGTCAGAGGTTCAAAGAAAAAAACTAAGGACTTGACACCTCATCGTGCCACTGCACTGTCTTTCATGCATCTTATGAAATTTTATAAGGAAGCCCTCTTGAGACTGAACGGTACTTCAAAAGAGTCTTCAAAGACCATAGATACCTTGACATGCCACGACTGCCGCCTCCACTGCCTACAGAGATTCTTACGCATTGCATCACAGAGGTGCTACTACTGTGGGAGAAAGTATACTATTTTTAAGAGGGATGACATGTTGAAAATGGAAGATGCTGCCAAGAAATTTGAACAGGAAAAAGATATCAAGTTGAAAGTTGACGGAAAAATGAATTGTAGCTGTGAAGCAAACACGTTATCTCTGTCATGTATTTTCTCCATTGCCGGAAATGAAGAATGCATGCAAGATCTTCAGAATAATCGCATTCCACTCACACGTGTCGATGATAGCGGGCCCAGCGAGAGTTCAGCCCAGCAACAGCAAGGCAGGGAAGATGAACAAGAGGCTCTGGGCCCTAGAAGGCCCGGGAGGATCACCAGTGACCCGTACTGGATGAAGGATTTCGTCTGA 1773 0.4162 MSTHRTDVTTEASHASNSSSNKMDAPKVARRGRPKKTKANKTGKFDLTDLQWTSDIPECPEYHPSEEEFEDPFIYLQKIAPEASKFGICKIVSPIVASVPAVDVLTKEKKDFKFECFVQPLRLPRWSKKDKIIFSMSERNYTYNEFEAHANEAFHSRFHSSGDLSSSYLEKEFWREMARGGKRTVEYGVNIEDSAFSSDPNDKLATSKWNLKNFSRLPQSTLRLIDIEMPGVTDPMLYIGMLFSMFAWHVEDQYLYSINYHHCGANKIWYGVPANAASQFENVVLNNVYCNEILSEHGEDGAFQLLRHKTTMFPPNILLQNDVEVYKAVQKPGEFVITFPRAYHAGFSTGFNCGEAVNFATGDWFPLGAAASKRYAHLRICPVIAYEELLCKEAMQIYKSLKVRGSKKKTKDLTPHRATALSFMHLMKFYKEALLRLNGTSKESSKTIDTLTCHDCRLHCLQRFLRIASQRCYYCGRKYTIFKRDDMLKMEDAAKKFEQEKDIKLKVDGKMNCSCEANTLSLSCIFSIAGNEECMQDLQNNRIPLTRVDDSGPSESSAQQQQGREDEQEALGPRRPGRITSDPYWMKDFV 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g02030 590 MobiDBLite consensus disorder prediction 1 42 - -
Pumo11g02030 590 PANTHER LYSINE-SPECIFIC DEMETHYLASE 52 553 - -
Pumo11g02030 590 ProSiteProfiles JmjN domain profile. 59 100 IPR003349 -
Pumo11g02030 590 MobiDBLite consensus disorder prediction 1 24 - -
Pumo11g02030 590 SMART cupin_9 206 376 IPR003347 -
Pumo11g02030 590 Pfam jmjN domain 60 92 IPR003349 -
Pumo11g02030 590 SMART JmjN_1 58 101 IPR003349 -
Pumo11g02030 590 MobiDBLite consensus disorder prediction 545 590 - -
Pumo11g02030 590 ProSiteProfiles JmjC domain profile. 206 376 IPR003347 -
Pumo11g02030 590 SUPERFAMILY Clavaminate synthase-like 193 397 - -
Pumo11g02030 590 MobiDBLite consensus disorder prediction 545 566 - -
Pumo11g02030 590 Gene3D Cupin 60 425 - -
Pumo11g02030 590 Pfam JmjC domain, hydroxylase 236 359 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g02030 Pumo-Chr11 52385871 52388642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g02030 55 405 JUMONJI Transcription Factor Family AT2G34880 35.294 2.83e-65 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pumo11g02030 JmjC 4.7e-40 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g02030 - - lang:109363426 668.307