Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01997 ATGGACTCCACATTAGACTTGGATGATGTTATTATTCATTATGATGCTTTGAATCTTCCAAGTTTGCATAAGGAGGACAAGACAACACACAAGGAGCACCAGCACTACACCGTTTTGAGCGAATCCGACATCAGGCGACATCAAGGCGCAAACATCAACCAGGTTTCGCACGTTCTCTTGATATCAATAGTTTATGCTTGCCTTTTGCTCATCCACCACGAGTGGAGTGTGCTCAAAGTGCACGAAGTATGGTTTGATGATGAAGAAAGAGTTCGCAGAGCTGTAGGGTTGTTAAAGCAGCATGAACCCCAGGTAGGTTTTCCCAACTCAAAAACCCTCACTTGTGAGATATGTTTCGATGTTGTTTCATACGATAAGGTTAGATCAGCTAGTTGTGGTCATCTATATTGCATCCCTTGCTGGAAGAAGTACGTGGATACAAGCATCAACGAGGGCCCTGATAAGTGCTTGAAACTTAGATGCCCTCAACCCTCTTGTGATGCAGCTGTGGGTGGAGACATGATTCGCGAACTTGCAAGTGAGTCAAATAGGAACAAGTACAATCGATTTCTGTTTCGATCTTATGTGGAAAACAACAAGAAGGTGAAGTGGTGTCCTGCTCCAGATTGTGAGTATGCTGTGAGTTATGAACCAGATGGTGTTAGAACTAATTCAGATGTTACCTGTCTTTGTTATCACTCCTTTTGTTGGAGTTGTGGCGAAGAAGCTCATAGCCCTGTGGATTGTGAAACCGCGAAACACTGGATCATAAGGAATGATCATGAATCATATGTGAACAATGCTTCCATTCTTACTAATACCAAATCTTATCCTGAGTGCAAGAAACCCATTGAGAAAATCAACAGGTACATGCACATGGAATGCGAGTGTGGGTTCCAATTTTGTTGGTTATGTCTTCGCGAATCGTCCAACTGCTGTTATAGCTGCGTCCATTTTCCTGACAATGATATTTACAAGAAGGAAGTGGAGAGAAATGTGGTACTTAATTATTTGGAGGATCGCACTCATTGTTATAAGCGTTGGGTCAACAATGATTTGTCAAGAAAAAATGCGCTTAATCATCTAATGTTCTTGATGAATGGTGGGCATACAAAGAGACTGAGTATGTTATATCGAAGGTCAGAAGATGATTTTGAGTTCATAAAGGTAGCGTGGCAACAAGTGGTTGAGTCTATAAGAGTGCTCAAATGGACTTATCCATATGGATTCTATCTCCCTCAGAGTGAACAAGCTAAAAGGGAGTTTCTTGAGTACTCACAACGCGAGGCTGAAGTTGTTTTGGAAAAGCTTTGTCATTGTGCAAAGGAGGAACTAGGGGAGTTTCTTTATGCTAATAAGCCAAAAGAGACATTTGATAATTTTCGTTGGAAGTTAATGGAACTTACTCGTGTCACTAAGGCTTATTTTGAGAATCTGGTGAAAGCCTTAGAGAATGGGCTGACTAGTGTGCATGTAAAAAATTATGCTGGACTCAGTGGAATGAAAAGAGAATCAAAGGAGACAGGGGAAAATTCATCTGGAAAGAAAATGAGAAGCTGA 1560 0.4122 MDSTLDLDDVIIHYDALNLPSLHKEDKTTHKEHQHYTVLSESDIRRHQGANINQVSHVLLISIVYACLLLIHHEWSVLKVHEVWFDDEERVRRAVGLLKQHEPQVGFPNSKTLTCEICFDVVSYDKVRSASCGHLYCIPCWKKYVDTSINEGPDKCLKLRCPQPSCDAAVGGDMIRELASESNRNKYNRFLFRSYVENNKKVKWCPAPDCEYAVSYEPDGVRTNSDVTCLCYHSFCWSCGEEAHSPVDCETAKHWIIRNDHESYVNNASILTNTKSYPECKKPIEKINRYMHMECECGFQFCWLCLRESSNCCYSCVHFPDNDIYKKEVERNVVLNYLEDRTHCYKRWVNNDLSRKNALNHLMFLMNGGHTKRLSMLYRRSEDDFEFIKVAWQQVVESIRVLKWTYPYGFYLPQSEQAKREFLEYSQREAEVVLEKLCHCAKEELGEFLYANKPKETFDNFRWKLMELTRVTKAYFENLVKALENGLTSVHVKNYAGLSGMKRESKETGENSSGKKMRS 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01997 519 Pfam Zinc finger, C3HC4 type (RING finger) 115 156 IPR018957 GO:0046872
Pumo11g01997 519 ProSiteProfiles Zinc finger RING-type profile. 115 162 IPR001841 -
Pumo11g01997 519 ProSiteProfiles TRIAD supradomain profile. 111 324 IPR044066 -
Pumo11g01997 519 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 199 IPR013083 -
Pumo11g01997 519 Gene3D - 245 490 - -
Pumo11g01997 519 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 30 405 IPR031127 GO:0004842|GO:0016567
Pumo11g01997 519 SUPERFAMILY RING/U-box 270 316 - -
Pumo11g01997 519 FunFam RBR-type E3 ubiquitin transferase 109 199 - -
Pumo11g01997 519 Pfam IBR domain, a half RING-finger domain 185 249 IPR002867 GO:0008270
Pumo11g01997 519 SUPERFAMILY RING/U-box 186 257 - -
Pumo11g01997 519 CDD BRcat_RBR_ANKIB1 193 256 - -
Pumo11g01997 519 SMART ibrneu5 185 249 IPR002867 GO:0008270
Pumo11g01997 519 SMART ibrneu5 259 316 IPR002867 GO:0008270
Pumo11g01997 519 SUPERFAMILY RING/U-box 109 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01997 Pumo-Chr11 51965410 51966969 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01997 6 491 ARIADNE family AT1G65430 46.988 1.74e-143 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01997 K11968 - gmx:100801350 810.831