LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo11g01995	ATGGCAAATCATGGTGCAGTGTCTGAAACCAAGTCTACGTACGACGTTTTCCTTAGTTTTAGGGGTGAAGATACCCGTCATACTTTCACTCATAATCTCTATGATGCTTTATGCCGGAAGGAAATTATGACCTTCATGGATGATGAGGAGTTGAAGCTTGGAGATCAACTTGGTCCTACGCTTCTTAAAGCCATTGAAGAATCAAGGATCTCGATTGTTGTTTTCTCTGAAAATTATGCAGATTCTTCATGGTGCCTTGATGAACTTGTAAAGATCCATGAGTGTATGAAGTCAAAAAACCAGCTCGTTTGGCCCATCTTCTACAAAGTGGAACCCTCAGATGTGCGGCATCAAAATGGAAGTTATCGTAACGCCACGACTAAGCATGAAACAAGGAGGGACCAATCCAAGTTTATTGATGATCTTGTTAGCAAGATATTCATTAAAGTATCTCCTAAAGATTTATCTAATGATGAGCATATAGTTGGACGGGAGTATCGAGTTAAAGAATTGAAGTCACTTCTAGATCTTGAGTCTCACAATATCACTTGCCTGTTAGGGATTCATGGAACAGGTGGAATTGGCAAAACCACACTTTCCAAAGCTTTATATGACTCCATTTACAAGAAGTTTAATGGTTCATGCTTTCTTTTCAACGTTAAAGAAACCTCAAATCTAATTAATGGCCTAGAAAATCTACAACAAAGGCTTCTATCAGAGATACTTGAGGACAGCAAAATCGAGGTGAAAAGTAAAGAACAAGGAGCCAAAATAATAAAAAAAAGTCTTCATTCCAAAAGAGTTCTTATAGTTCTTGACGATGTTGATAACATTGAACAGTTGGAGAATTTGGCAAAGGAATGCGATTGGTTTGGTCCTGGGAGCAGGATCATTATAACAACAAGAGATACACATTCTCTAGATCTTTGTGAGGTCCAAAAGAGATACAATTATGTAAAGAGATACAATGTGAAAAATCTAAACGATCAAGAGTCTCTGGAGCTTTTTTGTCAAAGTGCCTTTAGAAAAAGCTATCCTGAATCTAACTATGGATGCCTGTCCAATCGTGCAATGCGTTGTTGCAAAGGCCTTCCATTGGCCTTAAAAGTACTAGGCTCTCATTTGGTTGGAAAAGATTTGGGTGGTTGGAAGGATGCATTGGATAGATATGAAAAGAGTCCGCATCCAAGTGTTCAAGGAGTTCTCAGAATAAGCTATGATAGCCTGCCCAGCGAGGAGAAGAACATTTTTCTCGATGTTGCATGCTTCTTCAAAGGGAAGAAATTGATATATATAAAAACTGTACTCGATGCGTGTAACTTCAGCTCAGGAGATGGTATTACAACATTAGTTGATAAATCACTTTTAACTGTTGATGACAACGATTGCTTGGGGATGCATGACATGATACAAGCCATGGGTAGAGAGATTGTTAAGGAGGAAGCGTGGAATGATGTTGGCGAACGCAGCAGATTATGGCATCATGACGATGTTTTTCAAGTACTAGCTGATAATAATGGAAGTAACAAAATTCAAGGAATCATGCTTGAGCCTCCACAAGATCAAGAAATTAATTGTATTGATACTGTATTTGAGAAGATGAAGAATCTTAGAATTCTCATTGTTCGTAACACAAGCTTTTCACAAGGACTTCGTTATCTCCCAAATAACTTAATGGTACTTGATTGGCTTAAGTGCCCTTCACAGTCTTTCCCATCATATTTTTATCCCAGGAAGATTGGGTACCTCTGTTTAGTTTCATGTCCTCAACTTGTATTGGAAAAGCCATTTATTGAGGTAGAATTGCTCATCGTTTTTCATAGTTTTGAGAATTTAACTCTCATGTGTTTCGCCTGTTGTGATATGGTTACTAAATTTCCTGATGTGTCTGGGGCCAAGAATTTAAGAACAATGGTGCTTGATGGATGCTCGAACCTGGTTAGCATTCATGAATCAGTTGGACATCTAGCTAACCTTGTTTCCCTAAGTGCTTCAGCATGCCGTCAACTCGAAAGTTTTGTGCCAACAATGTATTTGCCATCTCTCGAATTCCTTTCCTTTGAACGCTGTCGTAGACTCGCACACTTCCCAGAGATCGAGGGAACAATGAATAAGCCATTAGTGATTCGTATGTCAGACACAGCTATCAAGGAGCTTCCACAATCCTTTAAGAAGCTTACTGGGCTTATCTATCTTGATATGACACAATCACGCATTGCGGAGCTTCAAGAAATTCCAGAAGTACCGTCAAGTGCTCAAAAAGTATATGGAAGAGAATGCAAATCCTTAACTTCCGAGACATTCGACATATTATGTTCTCAGGTGCGTAAAGAGATGAAGGGATTAGAAATCATAACGCAGAAAGGGGAGATTCCAGAATGGTTCCATTGTGTTAAGAAGGGAGGGTTTCCGGTTTTCAAGGCTCGTGGGAAGTTCCCTGGGGTTGCTTTAGCGTTTGTGTTCGGGGAATTGAAACCCAACAAGTTTATACCATGGCCAGCTGTTGACATGCACTTGTTCGTTGAGGGTGAAGACAGAGGGTTCGGTGTTTCAGTTGTGGAGGAGAATCAAGCGTTGTTGTGTGACCTACAAGGTTTGTTCAAATTGGAGGAGTGGGAGGATGTAGGTGTTGGAATTGGTAATGATTGGAAGACCATAGAGGTTTACTGTAAATCAGCAGACTTCACTCTATGTTCATGGGGAGTTTACGTGTACAAGCAGCACGAGACTAACATGGAGAATATCGATTTCACTAGTCAAATTCCCAAATCCTCTTTGGAATTTGCTGCCATTCTCAGAGAAAGCATCGGGGAGATTGAGGACGAGGAGACTGATCCATGGTTGGAGGATTTAACAAAATACGAGTACAAGCAGCACGTGACTAACAAGGAGGATACCGTCAAGTTCACTAGTCAACTTCCCAGATCCTCTTTGGAAAGTGGCCGAGCTTTGCTGCCATGGAGGATTAATTCTCCAACAGAGGGAGAAGGTACTTCAAGGTTGAACATTGAGGACCAGGAGGACGAGGACATTGATTCATGGTCGGAGGAGATAGCAAAGAGGACAAGTGATGATGGGAAAAGAAAAATGTTTGATAAACATCCAATATATTATGTAACACCTAGAAAGAGAGAGAAAAAGAGTCATTCTTGTTAG	3156	0.403	MANHGAVSETKSTYDVFLSFRGEDTRHTFTHNLYDALCRKEIMTFMDDEELKLGDQLGPTLLKAIEESRISIVVFSENYADSSWCLDELVKIHECMKSKNQLVWPIFYKVEPSDVRHQNGSYRNATTKHETRRDQSKFIDDLVSKIFIKVSPKDLSNDEHIVGREYRVKELKSLLDLESHNITCLLGIHGTGGIGKTTLSKALYDSIYKKFNGSCFLFNVKETSNLINGLENLQQRLLSEILEDSKIEVKSKEQGAKIIKKSLHSKRVLIVLDDVDNIEQLENLAKECDWFGPGSRIIITTRDTHSLDLCEVQKRYNYVKRYNVKNLNDQESLELFCQSAFRKSYPESNYGCLSNRAMRCCKGLPLALKVLGSHLVGKDLGGWKDALDRYEKSPHPSVQGVLRISYDSLPSEEKNIFLDVACFFKGKKLIYIKTVLDACNFSSGDGITTLVDKSLLTVDDNDCLGMHDMIQAMGREIVKEEAWNDVGERSRLWHHDDVFQVLADNNGSNKIQGIMLEPPQDQEINCIDTVFEKMKNLRILIVRNTSFSQGLRYLPNNLMVLDWLKCPSQSFPSYFYPRKIGYLCLVSCPQLVLEKPFIEVELLIVFHSFENLTLMCFACCDMVTKFPDVSGAKNLRTMVLDGCSNLVSIHESVGHLANLVSLSASACRQLESFVPTMYLPSLEFLSFERCRRLAHFPEIEGTMNKPLVIRMSDTAIKELPQSFKKLTGLIYLDMTQSRIAELQEIPEVPSSAQKVYGRECKSLTSETFDILCSQVRKEMKGLEIITQKGEIPEWFHCVKKGGFPVFKARGKFPGVALAFVFGELKPNKFIPWPAVDMHLFVEGEDRGFGVSVVEENQALLCDLQGLFKLEEWEDVGVGIGNDWKTIEVYCKSADFTLCSWGVYVYKQHETNMENIDFTSQIPKSSLEFAAILRESIGEIEDEETDPWLEDLTKYEYKQHVTNKEDTVKFTSQLPRSSLESGRALLPWRINSPTEGEGTSRLNIEDQEDEDIDSWSEEIAKRTSDDGKRKMFDKHPIYYVTPRKREKKSHSC	1051

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo11g01995	1051	Gene3D	-	146	316	IPR027417	-
	Pumo11g01995	1051	SUPERFAMILY	Toll/Interleukin receptor TIR domain	8	142	IPR035897	-
	Pumo11g01995	1051	Gene3D	-	326	410	IPR042197	-
	Pumo11g01995	1051	Pfam	NB-ARC domain	165	393	IPR002182	GO:0043531
	Pumo11g01995	1051	Gene3D	Ribonuclease Inhibitor	511	779	IPR032675	-
	Pumo11g01995	1051	Gene3D	-	11	145	IPR035897	-
	Pumo11g01995	1051	ProSiteProfiles	TIR domain profile.	12	146	IPR000157	GO:0007165
	Pumo11g01995	1051	FunFam	Disease resistance protein (TIR-NBS-LRR class)	10	149	-	-
	Pumo11g01995	1051	Pfam	TIR domain	14	136	IPR000157	GO:0007165
	Pumo11g01995	1051	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	14	748	IPR044974	GO:0006952
	Pumo11g01995	1051	SMART	till_3	13	149	IPR000157	GO:0007165
	Pumo11g01995	1051	PRINTS	Disease resistance protein signature	185	200	-	-
	Pumo11g01995	1051	PRINTS	Disease resistance protein signature	262	276	-	-
	Pumo11g01995	1051	PRINTS	Disease resistance protein signature	630	646	-	-
	Pumo11g01995	1051	PRINTS	Disease resistance protein signature	361	375	-	-
	Pumo11g01995	1051	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	157	419	IPR027417	-
	Pumo11g01995	1051	SUPERFAMILY	L domain-like	514	766	-	-
	Pumo11g01995	1051	SUPERFAMILY	"Winged helix" DNA-binding domain	398	502	IPR036390	-
	Pumo11g01995	1051	MobiDBLite	consensus disorder prediction	988	1015	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo11g01995	Pumo-Chr11	51929622	51936441	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo11g01995	14	746	WRKY Transcription Factor Family	AT4G12020	29.921	1.54e-83	296

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo11g01995	-		-	gmx:100801890	981.089