Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01991 ATGGGCAAGTCAAGCAAGAAATCAGCTCTCAAGGTTGACGCTGCTCCAGCTGTGGTTCCGCCATCCAAGTCTGCCAAGAAGGGAGGCAAGAGACAAGCTGAAGATGAAATTGAGAAGCAAGTGAGTGCAAAAAAACAGAAGATAGAGGAGGTTGCTCAGAAGCAAAAGAAGGAAGCAAAGCTTCAAAAGAAGGAGGAAAGTAGTTCAGATGACTCTTCTTCGGAATCTGAAGACGAGAAACCTGCAGCTAAACCTGCTGTTCTTTCAAAAAAGACTCCTGCTAAAAATGGCGCTCTAAGTGTGCCGGCAAAGAAAGGCAAGCCAGCCTCCAGTTCTTCTGAATCATCTGAAGATGACTCCTCTGATGAGGAAGAAGTGAGTGCAAAGAAGCCACAGAAAGTGGTTGCTGAGAAACAAAAGACTGTGCAAAAGAATAAGAAGGAAAGTAGTTCAGATGATTCTTCTTCAGAATCTGAAGATGAGAAACCTGCAGCAAAAGTTGCTGTTCCTTCCAAAAATCAATCTGCCAAAAATGGTACTGTAAGTGTCCCAGCAAAGAAAGGCAAGCCAGCTGCCAGCTCAAGCTCTTCTGATTCTGATGACTCCTCTGATGAGGATGAGGCTCCAAAAACCAAGGCGGTCCCTGCTGCAGGCAAGAATGTACCTGCTTCTACCAAGAAAACTCAGCCAAGTTCTGATAGTGAGTCCGATTCTGATAGCAGCTCTGATGAAGACGATGATGCAAAGCCCGCTGTAACTGCTGTGTCAAAGCCTTCTGCTGTTGCAAAAAAGAAGGTTGATAGCTCTGATTCTGATGATAGCAGCTCTGACGAAGACAATAAAAATGCTGCCAAAACTGTTTCCAATGCCAAGTCAGTGCCCTTGTCTAAGCAGCCTGTAAAGAAGTCAGGTAGTGGTGATTCAGATGAAGAGGAGTCTTCTGATAGTGACTCTGAGGATGAAATGGAAACTGCAAAAGTTTCTAATGCTAACAAGAAACCAGCACCTGTTGTGAAGACAGCTAAAAAGGAGTCTAGTGAAAGTTCATCAGAGAGTGATTCTTCAGATGACGAGGGGAAGAAGATGGATATTGACGAGGATGATAGTTCTGATGAGAGTGAAGAGCCACAAAAGAAAAAGACTGTGAAAGATTCAAAAGAAAGCAGTGATAGTTCTGAGGACAGCGAGGAGGAAAGTGAGGAGAAACCCTCCAAAACTCCTCAGAAAAGAGTTAGGGATGTGGAGATGGTAGATGCTGCCTCATCTGGAAAGAAAGCTCCCCAAACCCCAGCTACACCGAAAGAAGAAAGTGGTGCTTCAAAGACACTATTTGTTGGAAATTTGTCATTCAGTGTTGACAAAGCTGACGTGGAAAATTTTTTCAAGGATTGTGGAGAAGTTGTCGATGTTCGTCTTGCTACAGATGATGATGGGAGGTTTAAAGGATTTGGACATGTTGAGTTTGCAACAGCGGAGGCTGCCCAAAATGCCCTTGAGTTGAATGGACAAGAATTGTTTAATCGTGCACTTCGGCTTGATTTAGCTCGAGAAAGGGGTGCATATACTCCCAATAGCAGCAACTGGAACAACTCATCCCAGAAAAGTGGAAGAGGCCAGTCTCAAACTTTATTTGTGAGGGGTTTTGATAAATCCCTTGGGGAAGATGAGATTAGAGCTAGTTTGCAAGAACATTTTGGTTCTTGTGGGGAAATTACAAGGGTATCAATTCCGAAAGATTACGAGTCTGGTGCTGTTAAGGGGTTTGCTTACATGGACTTTGGTGATGCTGACAGCATGAGCAAAGCTCTAGAACTCCATGAAACTGAACTTGAAGGTTATACCTTGTCAGTGGATGAAGCCAAACCTAGAGATAATCAAGGTTCTGGTGGTAGAGGTGCAGGTGGAAGGAGTGGTGGTGGTCGATTTGGTGGAAGGAGTGGTGGTGGTCAATTTGGTGGAAGGAGTGGTGGTGGTCAATTTGGTGGAAGGGGTGGTGGTGGTGGTCGATTTGGTGGTGGAAGAGGTGGTCGAGGAAGAGGTGGTGGAAGGGGTCGTGGAACACCAAATAGACCCAACCTTGCTGCGGAAGGCACAGGGAAAAAGACCAAATTTGCTGATGACGAGTAG 2127 0.4509 MGKSSKKSALKVDAAPAVVPPSKSAKKGGKRQAEDEIEKQVSAKKQKIEEVAQKQKKEAKLQKKEESSSDDSSSESEDEKPAAKPAVLSKKTPAKNGALSVPAKKGKPASSSSESSEDDSSDEEEVSAKKPQKVVAEKQKTVQKNKKESSSDDSSSESEDEKPAAKVAVPSKNQSAKNGTVSVPAKKGKPAASSSSSDSDDSSDEDEAPKTKAVPAAGKNVPASTKKTQPSSDSESDSDSSSDEDDDAKPAVTAVSKPSAVAKKKVDSSDSDDSSSDEDNKNAAKTVSNAKSVPLSKQPVKKSGSGDSDEEESSDSDSEDEMETAKVSNANKKPAPVVKTAKKESSESSSESDSSDDEGKKMDIDEDDSSDESEEPQKKKTVKDSKESSDSSEDSEEESEEKPSKTPQKRVRDVEMVDAASSGKKAPQTPATPKEESGASKTLFVGNLSFSVDKADVENFFKDCGEVVDVRLATDDDGRFKGFGHVEFATAEAAQNALELNGQELFNRALRLDLARERGAYTPNSSNWNNSSQKSGRGQSQTLFVRGFDKSLGEDEIRASLQEHFGSCGEITRVSIPKDYESGAVKGFAYMDFGDADSMSKALELHETELEGYTLSVDEAKPRDNQGSGGRGAGGRSGGGRFGGRSGGGQFGGRSGGGQFGGRGGGGGRFGGGRGGRGRGGGRGRGTPNRPNLAAEGTGKKTKFADDE 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01991 708 MobiDBLite consensus disorder prediction 263 280 - -
Pumo11g01991 708 MobiDBLite consensus disorder prediction 1 438 - -
Pumo11g01991 708 MobiDBLite consensus disorder prediction 222 236 - -
Pumo11g01991 708 MobiDBLite consensus disorder prediction 337 359 - -
Pumo11g01991 708 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 49 586 - -
Pumo11g01991 708 Gene3D - 429 521 IPR012677 -
Pumo11g01991 708 MobiDBLite consensus disorder prediction 123 166 - -
Pumo11g01991 708 MobiDBLite consensus disorder prediction 27 85 - -
Pumo11g01991 708 SUPERFAMILY RNA-binding domain, RBD 528 650 IPR035979 GO:0003676
Pumo11g01991 708 MobiDBLite consensus disorder prediction 521 540 - -
Pumo11g01991 708 MobiDBLite consensus disorder prediction 613 708 - -
Pumo11g01991 708 CDD RRM1_NUCLs 442 518 IPR034349 -
Pumo11g01991 708 SUPERFAMILY RNA-binding domain, RBD 430 538 IPR035979 GO:0003676
Pumo11g01991 708 FunFam Nucleolin 2 415 525 - -
Pumo11g01991 708 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 441 517 IPR000504 GO:0003723
Pumo11g01991 708 MobiDBLite consensus disorder prediction 281 302 - -
Pumo11g01991 708 MobiDBLite consensus disorder prediction 373 390 - -
Pumo11g01991 708 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 443 511 IPR000504 GO:0003723
Pumo11g01991 708 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 543 615 IPR000504 GO:0003723
Pumo11g01991 708 Gene3D - 522 659 IPR012677 -
Pumo11g01991 708 MobiDBLite consensus disorder prediction 398 419 - -
Pumo11g01991 708 Coils Coil 30 65 - -
Pumo11g01991 708 FunFam Nucleolin 2 526 664 - -
Pumo11g01991 708 CDD RRM2_NUCLs 542 620 IPR034350 -
Pumo11g01991 708 SMART rrm1_1 542 618 IPR000504 GO:0003723
Pumo11g01991 708 SMART rrm1_1 442 513 IPR000504 GO:0003723
Pumo11g01991 708 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 541 622 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01991 Pumo-Chr11 51870117 51876058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01991 433 616 Eukaryotic Initiation Factors Gene Family AT4G34110 28.125 2.13e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01991 K11294 - gmx:100779929 584.719