Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01980 ATGCTTCTGGACAAGAATGATATTCAGGAAACCCATTATGAGGTTCTCAATGTCAAAGAAGACGCAAATTACGAAGAAATTCGTGCTAGTTACCGTAGTGCTGTACTCAGTTTACATCCTGATAAGCTATTGAAGACGTCCGAGACATCCAGCAGTAATCAAACAGCTGGAGAGAGATTTCTCAAAGTACAGAAGGCGTGGGAGATTCTGAGTAATTCAAGCTCCCGTTCGTTTTATGATAATGAGCTGCGAAGTTCAAGGCAGGATGTCTTGGCTGCTGATGTTGCCGAAGATTTGAGCTTACAGGATATGATGATTGAAGATGATGGAGAAGCATTGGAACTGTTTTATCAATGCAGATGTGGTGATTACTTCTCTGTAGACTCGTTGGAATTGAAGAAAATGGGATATTCCTTATTGAGGGAGGGAAGTGGGATATCTATACTGAATGTTGATACATTATTACCAGGATCAGTAATTCTTCCATGTGGATCCTGTTCGTTAAAAGCTCGTCTGCTAATCAATATGGATGCCAATTGA 540 0.4056 MLLDKNDIQETHYEVLNVKEDANYEEIRASYRSAVLSLHPDKLLKTSETSSSNQTAGERFLKVQKAWEILSNSSSRSFYDNELRSSRQDVLAADVAEDLSLQDMMIEDDGEALELFYQCRCGDYFSVDSLELKKMGYSLLREGSGISILNVDTLLPGSVILPCGSCSLKARLLINMDAN 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01980 179 Gene3D DPH Zinc finger 89 179 IPR036671 -
Pumo11g01980 179 SUPERFAMILY CSL zinc finger 96 176 IPR036671 -
Pumo11g01980 179 SMART dnaj_3 10 75 IPR001623 -
Pumo11g01980 179 PANTHER DPH3 HOMOLOG-RELATED 11 176 IPR044248 GO:0017183|GO:0046872
Pumo11g01980 179 Gene3D DnaJ domain 2 88 IPR036869 -
Pumo11g01980 179 ProSiteProfiles dnaJ domain profile. 11 83 IPR001623 -
Pumo11g01980 179 Pfam DnaJ domain 11 80 IPR001623 -
Pumo11g01980 179 SUPERFAMILY Chaperone J-domain 10 83 IPR036869 -
Pumo11g01980 179 CDD DnaJ 11 72 IPR001623 -
Pumo11g01980 179 ProSiteProfiles DPH-type metal-binding (MB) domain profile. 95 175 IPR007872 -
Pumo11g01980 179 FunFam DNAJ heat shock N-terminal domain-containing protein-like 89 178 - -
Pumo11g01980 179 Pfam CSL zinc finger 99 173 IPR007872 -
Pumo11g01980 179 FunFam DNAJ heat shock N-terminal domain-containing protein-like 2 86 - -
Pumo11g01980 179 PRINTS DnaJ domain signature 31 46 IPR001623 -
Pumo11g01980 179 PRINTS DnaJ domain signature 13 31 IPR001623 -
Pumo11g01980 179 PRINTS DnaJ domain signature 55 75 IPR001623 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01980 12 94 C2H2 Transcription Factor Family AT1G74250 40.964 2.76e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01980 K17867 - gmx:100814856 333.183