Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01963 ATGGCCCAAGGCGTGAAGCCTAAGGTGCTAAAGATGGTTGTTCTCCTCAAGCTAGGGTTTTTCAGAGAGTCAGATTCGCTCGCCTTGCTTCGCCACACAACAGCAGCTGCAACTATGGCTCCCAAACGAGGTGGAAAGGCTCCGGCTCTAGCAGCTAAGAAGAAACCTGAGAAGGTTACGAATCCTTTGTTCGAGAAGCGTCCAAAGCAGTTCGGAATCGGAGGGGCGTTGCCTCCGAAGAGAGACTTGACTCGTTTCGTGAAGTGGCCAAAGACTGTTCAGATTCAGAGGAAGAAGAGGATTCTGAAGCAGAGGTTGAAGGTTCCCCCAGCTTTGAACCAGTTTACCAAAACTCTTGACAAAAACCTAGCAACAAGTCTGTTCAAGTTACTTCTGAAGTACAGGCCTGAGGATAAAGCAGAAAAGAAGGAGAGGCTCTTGAAAAGGGCTCAGGCAGAGGCTGAAGGCAAAACTGTTGAGGCTAAGAAGCCTATTGTTGTGAAGTATGGTCTCAACCATGTTACCTACCTTATTGAGCAGCAGAACAAAGCACAGCTTGTTGTGATAGCTCATGATGTGGACCCAATTGAATTGGTTGTCTGGCTTCCAGCATTGTGCAGGAAGATGGAAATTCCATACTGCATTGTGAAGGGAAAAGCCCGCTTGGGAACGGTTGTCCATAAGAAAACTGCATCCGTCTTGTGCCTGACAACTGTTAAGAATGAAGATAAATTGGAGTTCAGCAGAGTCTTGGAGGCTATCAAGGCTAACTTCAATGACAAATATGACGAGTACAGAAAGAAGTGGGGTGGTGGAATCATGGGATCCAAATCCCAAGCCAAAACCCGGGCCAAGGAAAAGCTTCTTGCCAAGGAAGCTGCTCAGAGGATGTCTTAG 897 0.4738 MAQGVKPKVLKMVVLLKLGFFRESDSLALLRHTTAAATMAPKRGGKAPALAAKKKPEKVTNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKTVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATSLFKLLLKYRPEDKAEKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGTVVHKKTASVLCLTTVKNEDKLEFSRVLEAIKANFNDKYDEYRKKWGGGIMGSKSQAKTRAKEKLLAKEAAQRMS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01963 298 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 81 274 - -
Pumo11g01963 298 Gene3D - 89 273 IPR029064 -
Pumo11g01963 298 FunFam 60S ribosomal protein L7a 89 273 - -
Pumo11g01963 298 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 154 245 IPR004038 -
Pumo11g01963 298 SUPERFAMILY L30e-like 127 269 IPR029064 -
Pumo11g01963 298 ProSitePatterns Ribosomal protein L7Ae signature. 206 223 IPR004037 GO:0042254|GO:1990904
Pumo11g01963 298 Coils Coil 140 160 - -
Pumo11g01963 298 PRINTS Ribosomal protein L7A family signature 105 124 IPR001921 -
Pumo11g01963 298 PRINTS Ribosomal protein L7A family signature 225 249 IPR001921 -
Pumo11g01963 298 PRINTS Ribosomal protein L7A family signature 129 142 IPR001921 -
Pumo11g01963 298 PRINTS Ribosomal protein L7A family signature 85 102 IPR001921 -
Pumo11g01963 298 PRINTS Ribosomal protein L7A family signature 163 183 IPR001921 -
Pumo11g01963 298 PRINTS Ribosomal protein L7A family signature 68 85 IPR001921 -
Pumo11g01963 298 PRINTS Ribosomal protein L7A family signature 257 277 IPR001921 -
Pumo11g01963 298 PRINTS Ribosomal protein L7A/RS6 family signature 203 213 IPR018492 -
Pumo11g01963 298 PRINTS Ribosomal protein L7A/RS6 family signature 213 227 IPR018492 -
Pumo11g01963 298 PRINTS Ribosomal protein L7A/RS6 family signature 167 181 IPR018492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01963 Pumo-Chr11 51495650 51500161 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01963 39 298 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 85.000 1.75e-166 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01963 K02936 - gmx:100792324 467.233