Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01961 ATGAGCTCTCGGGCAGGCAAGGGACCTGCTGTCAGAAGCTATCGACGGAGAAAGACAGCTTTGGACCTTGACCTTAACCGTGTACCGGCTGGTGAGAATCGTGAGCAGGAGGGACCTTCAACTCAGTTGGGGCCTCAAGAAGTTCAAGTTGAACAGCAGCCGCAGGCTACTCAACCTCCGATGATTGACGTGGAAGCCATTGATGATGATGTTGTTGAATGTACCCCAAGGGCTTTTGCTGAGGCTAAAAACAATTCAAGAAGAATTCGTAGGAGGACTATAGTTGATGTTGATCTAGAAGATCAGACTAGGCGCAACAAACGCAGAAGAGAATTGCCAAATCAAATGATTATTAATTGTGATAAGTATATAAATTTGGAAGGCAGTAGCAGTTCTATGGGGGAAAGTGTTAAAAAGCCACCCGAACCTCCAAAGGAGCTTGTCTTCAACTGTCCAATATGTATGGGCCCTATGGTACATGAAATGTCGACAAGGTGTGGTCATATTTTTTGCAGGGATTGCATCAAGGCTGCTATAAGTGCTCAGGGTAAATGTCCTACCTGTAGGAAAAAGGTTGTTGTGAAAGATCTTATAAGGGTGTATCTCCCATCAACTAGTTGA 621 0.4477 MSSRAGKGPAVRSYRRRKTALDLDLNRVPAGENREQEGPSTQLGPQEVQVEQQPQATQPPMIDVEAIDDDVVECTPRAFAEAKNNSRRIRRRTIVDVDLEDQTRRNKRRRELPNQMIINCDKYINLEGSSSSMGESVKKPPEPPKELVFNCPICMGPMVHEMSTRCGHIFCRDCIKAAISAQGKCPTCRKKVVVKDLIRVYLPSTS 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01961 206 SMART ring_2 151 188 IPR001841 -
Pumo11g01961 206 SUPERFAMILY RING/U-box 150 195 - -
Pumo11g01961 206 MobiDBLite consensus disorder prediction 15 31 - -
Pumo11g01961 206 Pfam Zinc finger, C3HC4 type (RING finger) 150 188 - -
Pumo11g01961 206 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Pumo11g01961 206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 204 IPR013083 -
Pumo11g01961 206 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Pumo11g01961 206 MobiDBLite consensus disorder prediction 35 59 - -
Pumo11g01961 206 MobiDBLite consensus disorder prediction 1 60 - -
Pumo11g01961 206 PANTHER ELFLESS, ISOFORM B 1 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01961 Pumo-Chr11 51490653 51492727 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01961 12 205 C3H Transcription Factor Family AT5G48655 50.249 3.48e-49 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01961 K22651 - gmx:100306616 357.836