Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01954 ATGGCATCGGCGTTCGTCAAGCTCGATGATTCCCCTATGTTCCAAAAACAGTTATTTTCTCTTGAAGAAACAACTGATGAGCTAAAGGATCGGTGCCAGAAACTATATAAAGGGTGTAAGAAGTTTATGACAGCTTTGGGGGAAGCATATAATGGAGAAATAGCCTTTGCTGATTCATTAGAAGTATTTGGTGGTGGCCAAGATGACCCTGTCAGTGTATCAATTGGAGGGCCCGTCATATCTAAGTTTATTACCTCACTGCGTGAGCTAGCTTCTTTTAAAGAGCTTCTTCGTTCACAGGTAGAGCATGTGTTGATTGACCGGCTGACGGAGTTTATGAATGTTGATTTGCAAGATACAAAGGATTCTCGTCGTCGTTTTGACAAAGCTGTGCATTCTTATGATCAGTCACGAGAGAAGTTTGTCTCTTTGAAGAAGAATACACCGGAAGATGTTGTTGCTGAATTAGAAGAGGATCTACAAAATTCAAAATCAGCATTTGAAAAAAGTCGCTTCAATCTAGTAAACTCTCTCATGAATATTGAAGTGAAAAAGAAGTATGAGTTCTTGGAGTCCATTAGTGCAATAATGGATGCTCATTTGAGATATTTTAAGCTGGGTTATGACTTACTAAGCCAAATGGAGCCCTATATTCACCAGGTGCTAACATATGCACAGCAATCAAAAGAACTTGCTAATATTGAGCAAGATAAGCTTGCAAAACGGATTCAGGAATACAGAACACAGGCAGAGCTGGAGAATATACGAGCTTCTAGCAATTATACAGAAACCATTCCAAGTTCTGATGGCACCCATGTTGTAGGTTTGAACTCTTACAGAAGTTTTGAAGCAGGGATGCAGCCTGCAACCAAAGGGGAGGTTCAAACAGTTAAACAGGGTTATCTGTTAAAACGATCATCAAGCTCGCGTGGAGATTGGAAACGGAGGTTCTTTGTACTCGATAACCAAGGGAATTTATATTATTACAGAGTGAAGGGTGTCAAACCCATGGGCTCTCAGTCATATAATTATACTCGCTCTTCTGAACAAAATAGTGGCATGTTTGGTAGATTCCGTTCAAGACACAACAGGGCTGTGTCTCTAAATGAGGATGTTTTAGGTTGTTGTACAGTTGATCTATGCACGTCCACTATAAAGATGGATGCAGACGATACAGATCTACGACTTTGCTTCCGAATAATTTCTCCCTCAAAAACATACACACTACAGCTGACTAGGATGGACTGGGTAAACAAAATTACTGGAGCTATCACATCGCTTTTTAATTCTCAGTTTCTTCAACAGCCTCAATATGGTAGAGTGAATTCACAGAATAGAAACTCAGCAACTGGTGCTTCTTTGGCAAGTCAATCAGAGGATGGTCAGAAATCATTGAGGGATGACGTATATTCCAAGGAAGTGGGTAGTGTCTCTAAGCTTTTAAGGGGAATTCCTGGGAATGATAAATGTGCTGAGTGCAGTGCTCCTGAACCAGACTGGGCATCTCTAAACCTTGGCATATTGCTGTGTATTGAATGCTCTGGAGTGCATCGAAATCTTGGTGTTCATGTCTCAAAGGTGAGATCTATAACATTAGATGTCAGGGTTTGGGAAAATACCGTTCTGGAGTTATTTGATAACTTAGGTAATGCTTATTGTAATTCTATCTGGGAGGGCTTGCTTCTACTTGATCATGAAAGGGTAGGTGAATCAAATGTGCCTATGAAACCTTGCTCTACAGATGCCTTCCAACACAAGGAGAAGTACATCCAAGCAAAGTATGTAGAGAAATCACTAATCATCCGAGAAGAGGATATACCCGAGAATCCTTCAGTTTCCACAAGAATCTGGCAAGCAGTTCAGGCTGTAAATGTCCGAGAAGTGTATCGCCTTATTGTCACATCAACATCAAATCTGATAAACACAAAATTTTATGATGAGGCTCACCATGCTGCCGATGCCGAAGGGCATCAGCATGATCCTGAAGCCTGTCTGAAAGTTGAAGAGACTACTGAGACAGAGAGGTGTTTCCGTGGATGGTCATTATTACATCTGGCATGTCATTCTGGCAGTGCACTGATGGTTGAGTTGTTGCTCCAATTTGGTGCTGATGTAAACATGTGTGACTATCATGGAAGAACTCCCTTGCACCATTGCATTACAAGTGGTAAAAATCAATTGGCAAAGTTTCTATTAAGAAGGGGTGCAAGGCCGTCAGTTAAAGATGCTGGAGGACTCACTGTACTTGAAAGAGCAATGGAGATGGGAGCAATAACTGACGAAGAGCTATTTATCTTGCTTGCTGAATGCCAGTGA 2316 0.4123 MASAFVKLDDSPMFQKQLFSLEETTDELKDRCQKLYKGCKKFMTALGEAYNGEIAFADSLEVFGGGQDDPVSVSIGGPVISKFITSLRELASFKELLRSQVEHVLIDRLTEFMNVDLQDTKDSRRRFDKAVHSYDQSREKFVSLKKNTPEDVVAELEEDLQNSKSAFEKSRFNLVNSLMNIEVKKKYEFLESISAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKELANIEQDKLAKRIQEYRTQAELENIRASSNYTETIPSSDGTHVVGLNSYRSFEAGMQPATKGEVQTVKQGYLLKRSSSSRGDWKRRFFVLDNQGNLYYYRVKGVKPMGSQSYNYTRSSEQNSGMFGRFRSRHNRAVSLNEDVLGCCTVDLCTSTIKMDADDTDLRLCFRIISPSKTYTLQLTRMDWVNKITGAITSLFNSQFLQQPQYGRVNSQNRNSATGASLASQSEDGQKSLRDDVYSKEVGSVSKLLRGIPGNDKCAECSAPEPDWASLNLGILLCIECSGVHRNLGVHVSKVRSITLDVRVWENTVLELFDNLGNAYCNSIWEGLLLLDHERVGESNVPMKPCSTDAFQHKEKYIQAKYVEKSLIIREEDIPENPSVSTRIWQAVQAVNVREVYRLIVTSTSNLINTKFYDEAHHAADAEGHQHDPEACLKVEETTETERCFRGWSLLHLACHSGSALMVELLLQFGADVNMCDYHGRTPLHHCITSGKNQLAKFLLRRGARPSVKDAGGLTVLERAMEMGAITDEELFILLAECQ 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01954 771 PRINTS HIV Rev interacting protein signature 506 523 IPR001164 GO:0005096
Pumo11g01954 771 PRINTS HIV Rev interacting protein signature 487 506 IPR001164 GO:0005096
Pumo11g01954 771 PRINTS HIV Rev interacting protein signature 529 550 IPR001164 GO:0005096
Pumo11g01954 771 MobiDBLite consensus disorder prediction 444 465 - -
Pumo11g01954 771 Gene3D Arfaptin homology (AH) domain/BAR domain 7 253 IPR027267 -
Pumo11g01954 771 SMART 5bar 13 220 IPR004148 GO:0005515|GO:0005737
Pumo11g01954 771 MobiDBLite consensus disorder prediction 444 460 - -
Pumo11g01954 771 ProSiteProfiles Ankyrin repeat profile. 678 710 IPR002110 GO:0005515
Pumo11g01954 771 ProSiteProfiles PH domain profile. 295 425 IPR001849 -
Pumo11g01954 771 Gene3D - 289 438 IPR011993 -
Pumo11g01954 771 SUPERFAMILY ArfGap/RecO-like zinc finger 478 600 IPR037278 -
Pumo11g01954 771 Gene3D Arf GTPase activating protein 456 607 IPR038508 -
Pumo11g01954 771 ProSiteProfiles Ankyrin repeat region circular profile. 678 709 - -
Pumo11g01954 771 SMART arf_gap_3 475 607 IPR001164 GO:0005096
Pumo11g01954 771 SUPERFAMILY PH domain-like 296 444 - -
Pumo11g01954 771 PANTHER CENTAURIN/ARF 3 768 IPR045258 GO:0005096
Pumo11g01954 771 Coils Coil 229 249 - -
Pumo11g01954 771 ProSiteProfiles BAR domain profile. 3 227 IPR004148 GO:0005515|GO:0005737
Pumo11g01954 771 ProSiteProfiles ARF GTPase-activating proteins domain profile. 475 607 IPR001164 GO:0005096
Pumo11g01954 771 Pfam Putative GTPase activating protein for Arf 479 599 IPR001164 GO:0005096
Pumo11g01954 771 SUPERFAMILY Ankyrin repeat 619 768 IPR036770 -
Pumo11g01954 771 SUPERFAMILY BAR/IMD domain-like 8 318 IPR027267 -
Pumo11g01954 771 SMART ANK_2a 678 707 IPR002110 GO:0005515
Pumo11g01954 771 SMART ANK_2a 711 740 IPR002110 GO:0005515
Pumo11g01954 771 CDD BAR_SFC_plant 16 217 IPR035670 -
Pumo11g01954 771 Pfam PH domain 297 420 IPR001849 -
Pumo11g01954 771 CDD ArfGap 479 594 - -
Pumo11g01954 771 SMART PH_update 296 427 IPR001849 -
Pumo11g01954 771 Pfam BAR domain of APPL family 8 230 IPR004148 GO:0005515|GO:0005737
Pumo11g01954 771 ProSiteProfiles Ankyrin repeat profile. 711 743 IPR002110 GO:0005515
Pumo11g01954 771 Gene3D - 611 762 IPR036770 -
Pumo11g01954 771 ProSiteProfiles Ankyrin repeat region circular profile. 711 742 - -
Pumo11g01954 771 Pfam Ankyrin repeats (3 copies) 674 742 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01954 Pumo-Chr11 51424894 51436735 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01954 477 594 C2H2 Transcription Factor Family AT3G07940 41.176 1.27e-18 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01954 K12489 - gmx:100796740 1459.89