Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01939 ATGGCTTCCCTCTATGATGTGCTTGGAATTTCAGTGGGTGCAAGCTGTCTTGAAATAAAGGCTGCATACAGAAAGCTGGCAAGAACATACCATCCTGATGTTGTGGCCATGAATCAGAAAGAAAGCTCAGCAAACCAATTCATGATGATCCATTCAGCTTACTCAACTTTGTCTGACCCAGAGAAGCGAGCTCAATATGATAGAGAAAACTATAGACACAGAAGATCAGCAAATATGGCTTCCATGGCAGGAAGAAATCAGACATTTTCCTATGCTGGAAGTGGAAGGAAATGGGAAACAGACCAATGTTGGTAG 315 0.4254 MASLYDVLGISVGASCLEIKAAYRKLARTYHPDVVAMNQKESSANQFMMIHSAYSTLSDPEKRAQYDRENYRHRRSANMASMAGRNQTFSYAGSGRKWETDQCW 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01939 104 ProSiteProfiles dnaJ domain profile. 3 70 IPR001623 -
Pumo11g01939 104 Pfam DnaJ domain 4 67 IPR001623 -
Pumo11g01939 104 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Pumo11g01939 104 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 2 104 - -
Pumo11g01939 104 SMART dnaj_3 2 62 IPR001623 -
Pumo11g01939 104 CDD DnaJ 5 59 IPR001623 -
Pumo11g01939 104 PRINTS DnaJ domain signature 5 23 IPR001623 -
Pumo11g01939 104 PRINTS DnaJ domain signature 23 38 IPR001623 -
Pumo11g01939 104 PRINTS DnaJ domain signature 62 81 IPR001623 -
Pumo11g01939 104 PRINTS DnaJ domain signature 42 62 IPR001623 -
Pumo11g01939 104 Gene3D DnaJ domain 2 101 IPR036869 -
Pumo11g01939 104 SUPERFAMILY Chaperone J-domain 2 77 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01939 Pumo-Chr11 51304454 51305208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01939 5 67 C2H2 Transcription Factor Family AT1G74250 44.776 1.18e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01939 - - gmx:100798520 192.971