Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01933 ATGGAAAAGTATCGGTGTCGTACTCGTGTCGGACATCGATACGCCTCCGATACGTCCCGATACGTTGTTGAGATCCTTGAGGAGAAACCAGAAGAGGAGCCTGAAATTACACACAGAGTATTCTTGGATATTGATATTGATAAACAGCGTTTAGGTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGGAAAATTTTAGAGCTTTGTGTACAGGGGGGAAAGGCAAGAGTGCAGAGGGCATAAAGCTTCATTACAAAGGAACACCATTTCATCGGATAATATCTGGTTTTGTGATTCAGGGTGGAGACATTGTTCATCATGATGGTAAAGGGTCTGAATCTATTTATGGTGGCACCTTTCCTGACGAGAATTTCAAGATTAAACATTCTCATGCTGGCGTTGTTTCTATGGCAAATTCAGGACCTGATTCCAATGGCTCACAGTTTTTCATTACCACAGTAAAGGCCAGTTGGTTGGATGGAGAGCATGTTGTCTTTGGCAGGGTTGTTCAAGGCATGGATATTGTGTATGTAATTGAAGGGGGAGCCGGAACCTACAGTGGAAAACCAAGAAAGAAGGTAGTGATAGCAGACTCTGGGGAGATACCAAAGATCCACTGGGATGAGGAAACTTGA 648 0.4321 MEKYRCRTRVGHRYASDTSRYVVEILEEKPEEEPEITHRVFLDIDIDKQRLGRIVIGLYGQVVPKTVENFRALCTGGKGKSAEGIKLHYKGTPFHRIISGFVIQGGDIVHHDGKGSESIYGGTFPDENFKIKHSHAGVVSMANSGPDSNGSQFFITTVKASWLDGEHVVFGRVVQGMDIVYVIEGGAGTYSGKPRKKVVIADSGEIPKIHWDEET 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01933 215 SUPERFAMILY Cyclophilin-like 35 206 IPR029000 -
Pumo11g01933 215 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 89 106 IPR020892 GO:0003755|GO:0006457
Pumo11g01933 215 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 44 203 IPR002130 GO:0000413|GO:0003755
Pumo11g01933 215 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 152 164 IPR002130 GO:0000413|GO:0003755
Pumo11g01933 215 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 58 73 IPR002130 GO:0000413|GO:0003755
Pumo11g01933 215 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 94 106 IPR002130 GO:0000413|GO:0003755
Pumo11g01933 215 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 165 180 IPR002130 GO:0000413|GO:0003755
Pumo11g01933 215 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 137 152 IPR002130 GO:0000413|GO:0003755
Pumo11g01933 215 Gene3D - 26 210 IPR029000 -
Pumo11g01933 215 FunFam Peptidyl-prolyl cis-trans isomerase 26 212 - -
Pumo11g01933 215 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 41 205 IPR002130 GO:0000413|GO:0003755
Pumo11g01933 215 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 39 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01933 Pumo-Chr11 51159248 51162112 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01933 52 203 U-box Gene Family AT5G67530 42.484 8.38e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01933 - - gmx:100800775 374.785