Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01927 ATGGGAAGGTCTCCTTGTTGTGAGAAAGCTCACACAAACAAAGGTGCATGGACAAAAGAGGAAGATGACAGGCTGATATCTTATATTCGAGCTCACGGCGAAGGCTGCTGGCGCTCCCTCCCCAAAGCCGCCGGCCTCCTCCGGTGCGGCAAGAGTTGCCGTCTCCGGTGGATCAATTACCTCCGCCCCGACCTCAAAAGAGGCAACTTCACCGAAGAAGAAGATGAACTCATCATCAAACTCCACAGTCTCCTCGGTAACAAGTGGTCCTTGATAGCTGGAAGACTGCCCGGGAGAACAGACAATGAAATAAAGAACTATTGGAACACTCACATAAGAAGGAAGCTTTTGAACAGAGGAATCGACCCTGCAACTCACAGGCCTCTCAACGAAGCTGCTTCTGCTACAACTGCCACTAATATATCTTTCGGTAATAAACAAGAACAAGAGACAAGTTCCAGTAACGGAAACGTTGTTAAAGGGTCCATCTTGGAACGCTGCCCTGACTTGAACCTTGAGTTAACCATTAGTCCTCCTCGCCAACAAAGGCAACAACAACACCACCAGACTCAGAAGAGTCTTTGCTTCGCTTGCAGTTTGGGTTTGCACAACAGCAAGGATTGCAGCTGCAACGTTTCCAACACTGTCACTGTCACTGTCAACAATACCACTCCTCCTCCCTCTACTGCTGCTGCTTATGATTTCTTGGGCTTGAAAACCAAAGGTGTTTGGGATTGCACCAGCTTGGAAATGAAATGA 759 0.4835 MGRSPCCEKAHTNKGAWTKEEDDRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEAASATTATNISFGNKQEQETSSSNGNVVKGSILERCPDLNLELTISPPRQQRQQQHHQTQKSLCFACSLGLHNSKDCSCNVSNTVTVTVNNTTPPPSTAAAYDFLGLKTKGVWDCTSLEMK 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01927 252 CDD SANT 69 112 IPR001005 -
Pumo11g01927 252 CDD SANT 16 61 IPR001005 -
Pumo11g01927 252 FunFam MYB transcription factor MYB48 69 166 - -
Pumo11g01927 252 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 199 - -
Pumo11g01927 252 SMART sant 66 114 IPR001005 -
Pumo11g01927 252 SMART sant 13 63 IPR001005 -
Pumo11g01927 252 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Pumo11g01927 252 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo11g01927 252 Gene3D - 69 139 - -
Pumo11g01927 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pumo11g01927 252 Gene3D - 14 66 - -
Pumo11g01927 252 FunFam MYB-related transcription factor 13 66 - -
Pumo11g01927 252 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo11g01927 252 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pumo11g01927 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo11g01927 252 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01927 Pumo-Chr11 51073939 51075508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01927 1 252 MYB Transcription Factor Family AT4G38620 59.155 2.13e-108 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo11g01927 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01927 K09422 - gmx:780553 424.091