Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01920 ATGACAGTTGAAAAGAGATTTGTTTTGGTGGGGATTAGAATCGATGGCTATAGCAGACAGCTCCTCAACTGGGCTCTTGTCAAAGTTGCTGAACCTGGGGACTGTGTTATAGCAGTTCATGTTGTTAAAAGTCTAGATTATGTTACCAAAAACAAGACCATGATAGATGACTATTTAGAGGTTTATGAAGGCCTATGTGGTGTGAAGAAGGTAGGTCTCACTGGTCAAATCTTCACAGGAAGCTCCATTCGAGACATTCTTGTTAGAGAAGCAAAAAAGCATGCTGCTCTGGCTCTAGTGGTAGGGGGTCGAGCTGCCACAGCTAAATATTGTGCTAAACGACTACCACCCACCACCAATGTTTTAGCCATTCAAGACTCAAGAATTGTCTTCAGAAGGTGCACCAATAAACAACTACCAGGTGGTCTTATACTGGATCCAAGACCAAGTTTAATAACAATCATAGAAAACCTGAGCGACAGAGTAGTCCAGTCTACATTTGATGACCCCATCGTGGAGATTGAGGAAACAACATGCAAAAATTCCTTAGAATTGAAGGAAGAAGCATTTAACGGGTCAGAAAAGAGTAAGTCAAGGTCAATATCCATGTTTGGAGGTGATTCTGCTGAGCAGAAGCTTGGGTGGCCTCTACTCCGCAGAGCCAATTCAGGAATGTCACAAACCCTTCATGCAAGGGACATGTCAGTTGTTCAATGGGTAATGACCCTACCAGATCGTTCACCACATAAAAGTTCTCGCTCTTCTTCCACAGAGGAAAATCCATTTGAAAGGAGCATCAGCGATATTGATGATGATAGCTCTAAAAATTCTTCTCTTCCATCTGTTGATATACCAAATGACCTAGAGGAGATGTTGAATGTAAATTCTCTCAATTGCAAGCGGTTCAGCCTTGAGGTTCTGAAGTCTTGCACTAGCCAATTCTCTTCAGAAAACTTGGTTGGGAAAGGAGGGAGCAATCGTGTGTACAAAGGAGTCCTCCCTGATGGAAAGCCAATTGCAGTTAAAGTATTGCAGTCATCAAAAGAAGCCTGGAAAGATTTTGCCCTTGAGGTGGAGATAATATCCTCATTGGAGCACAAAAGCATTGCCCCTCTGCTTGGGATTTGCATAGAGGACAATACTTTAAAATCTGTTTATGATTATTTCCCCAAAGGCAGCTTAGAGGAAAATCTGCATGGAAAGAACAAGGATGGATCCATCTTGTCATGGGAAGTGAGATTTAATGTGGCTGTTAGGATCGCTGAAGCCCTTGATTACCTACACAGCGAAGCTTTGAAACCTGTTATACATAAAGATGTCAAGTCTTCTAACATTCTTCTCTCCCAAGGGTTTGAACCTCAGTTGTCTGATTTTGGACTAGCAATATGGGGACCAACAACTTCATCCTTTTTGACCCAAGATGTAGTAGGAACATTTGGTTATCTTGCTCCTGAATACTTCATGTATGGAAAGGTTAGTGACAAGATAGATGTCTATGCCTTCGGTGTAGTTCTACTTGAACTAATATCAGGAAGGGAACCAATCAGCTCAGCAGCTTGCAAAGGACAGGAGAGCTTGGTCGTGTGGGCAAAACCAATAATAGAGAGTGGGAATGTTAAGGGCTTATTGGACCCAAATTTAGAAGGGAAGTTTGATGAGGCCCAATTGCAAAGAATGGTTCTAGCAGCATCTTTATGCATTACACGGGCTGCTAGACTTCGTCCTAAACTGAACCAGATACTGAAGATCCTAAAAGGAGAAGAGAAAGTTGAATATTTCTTAAACTCCCAAGGGGATAATCAGGAAGATTCAGAAAATCAAGAAAACATTGATGACGAAGTGTATCCAAATTCAAGTGCAGAGTTACACCTAAGTCTTGCATTACTTGGTGTTGACGATGAAAGTACGTCACATAGTAGCACAGACCAAAGCTATAGTGAACACTTGAAAGAACAATGGAGCAGGTCATCAAGTTTTAATTAG 1983 0.4165 MTVEKRFVLVGIRIDGYSRQLLNWALVKVAEPGDCVIAVHVVKSLDYVTKNKTMIDDYLEVYEGLCGVKKVGLTGQIFTGSSIRDILVREAKKHAALALVVGGRAATAKYCAKRLPPTTNVLAIQDSRIVFRRCTNKQLPGGLILDPRPSLITIIENLSDRVVQSTFDDPIVEIEETTCKNSLELKEEAFNGSEKSKSRSISMFGGDSAEQKLGWPLLRRANSGMSQTLHARDMSVVQWVMTLPDRSPHKSSRSSSTEENPFERSISDIDDDSSKNSSLPSVDIPNDLEEMLNVNSLNCKRFSLEVLKSCTSQFSSENLVGKGGSNRVYKGVLPDGKPIAVKVLQSSKEAWKDFALEVEIISSLEHKSIAPLLGICIEDNTLKSVYDYFPKGSLEENLHGKNKDGSILSWEVRFNVAVRIAEALDYLHSEALKPVIHKDVKSSNILLSQGFEPQLSDFGLAIWGPTTSSFLTQDVVGTFGYLAPEYFMYGKVSDKIDVYAFGVVLLELISGREPISSAACKGQESLVVWAKPIIESGNVKGLLDPNLEGKFDEAQLQRMVLAASLCITRAARLRPKLNQILKILKGEEKVEYFLNSQGDNQEDSENQENIDDEVYPNSSAELHLSLALLGVDDESTSHSSTDQSYSEHLKEQWSRSSSFN 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01920 660 Gene3D Transferase(Phosphotransferase) domain 1 389 601 - -
Pumo11g01920 660 SMART serkin_6 314 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g01920 660 SUPERFAMILY Protein kinase-like (PK-like) 295 584 IPR011009 -
Pumo11g01920 660 PANTHER OS08G0249100 PROTEIN 198 610 IPR046958 -
Pumo11g01920 660 ProSiteProfiles Protein kinase domain profile. 314 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g01920 660 FunFam Putative receptor-like serine/threonine-protein kinase 389 600 - -
Pumo11g01920 660 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 283 388 - -
Pumo11g01920 660 MobiDBLite consensus disorder prediction 633 660 - -
Pumo11g01920 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672|GO:0006468
Pumo11g01920 660 MobiDBLite consensus disorder prediction 244 282 - -
Pumo11g01920 660 MobiDBLite consensus disorder prediction 251 271 - -
Pumo11g01920 660 Pfam Protein kinase domain 316 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g01920 660 CDD USP_Like 8 104 - -
Pumo11g01920 660 Gene3D Phosphorylase Kinase; domain 1 281 388 - -
Pumo11g01920 660 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 8 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01920 Pumo-Chr11 50995429 50999721 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01920 301 587 Trihelix Transcription Factor Family AT1G70460 42.808 1.65e-72 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Pumo11g01920 Pkinase 1.8e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01920 - - gmx:100789189 1145.57