Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01918 ATGAAAGGCTCAAGTGTCCCCATAAACATAGACCAAAGGTATATATTGCGAAAAGGTGATTCTGGGTTTTATTCATACGCAATATTTAATCGACCAGCAGGATTACCTGCAGTGGAGGTTGATCAAATTATGATTGTTTTCAAACTCGACGGAGCCAGGTTCCACTATATGGCCATATCTGATACTAGGCAAAGGAACATGCCATCTGTGGCAGATAGAGTATCAGGTCAACGCCTGGCGTATCCTGAAGCTGTTCTCTTAACCCATCCATCTGAGCAACAATTTACGGGAGAGGTGGATGACAAATACCAATACTCGAGTGAGAACAAAGATAACACTGTTCATGGGTGGATTACCCAGGATGATTCAGCACCCGTGGGTTTCTGGTTGGTAACACCTAGTAATGAGTTCCGCCATGCTGGGCCCATTAAGCAAGACCTCACCTCTCATGTTGGCCCAATTACTCTTTCTATGTTTGTGAGCACTCATTATGCTGGCAAGGAGGTAACCATGGCATTTAATGAAGGGGAGACATATAAAAAGGTTTTTGGCCCAGTTTTTGTCTACCTTAACTCTGCTCCAAACAAATCTCAGTTTCGGTCTCTGTGGTCAGATGCTGTAGAACAGTTATCCAATGAAGTTAGAAGATGGCCTTATGATTTTGTTGGATCAAAAGATTTCCTTCCACCCAATCAACGGGGAACAGTGGCAGGACAGCTACTAGTCCAAGATGGGGGACAGAGAGCTCAACCTGCTAGCAATGCTTACGTTGGTCTAGCTTTGCCTGGAGACGCAGGATCATGGCAGAAAGAAAGCAAGGGTTATCAATTCTGGATTCAAGCTGGCAAAGATGGACACTTCTTAATTAACAACATTGTACCTGGGGATTACAACTTGTATGCATGGGTTCCTGGTTTTATTGGAGATTATAGATATACAACTAAAATTACCATCAAACCAGGGGGCAACATCAACTTGGATTCACTTGTTTATAATCCTCCAAGAAATGGTCCTACTCTATGGGAAATTGGGATCCCAGATCGCTCAGCTGCAGAATACTATATACCAGACCCTAACCCCAAGTTCATGAACAGATTATTCAAGAACGATAGCCAAGACAAGTTTAGGCAATACGGCTTATGGGAACGTTACACTGAGTTATATCCAAACGATGATCTCGTTTACACTGTTGGTGCTGCTGACTATCACAATGATTGGTTTTATGCTCAAGTTACCAGGAGCACAGCAGAAAAGACATTCGTGCCAACCACATGGCAAATTCAATTCCAACTTAAAAATATCATAATGCCAGGAAATTACACATTACAAGTGGCCTTGGTATCCGCCACTAATGCTAGATTGGAGGTAAGGTTCAATGACCCGAATGCTAAGCTTCCCCTCTTCTCAACAGGGCTAATAGGCGATGACAATGCCATAGCAAGACATGGCATCCATGGATTGTATAGGTTGTATACTGTAGCCATAGGAAGCAATCATTTGGTAAAAGGAAAGAACATCATCTATTTGACACAGTCAAAAGGCATAGGTCCTTTCATGGGAGTTATGTATGATTATGTCCGCTTAGAAAGTCCTCCAATTAACAATACTTGA 1611 0.4252 MKGSSVPINIDQRYILRKGDSGFYSYAIFNRPAGLPAVEVDQIMIVFKLDGARFHYMAISDTRQRNMPSVADRVSGQRLAYPEAVLLTHPSEQQFTGEVDDKYQYSSENKDNTVHGWITQDDSAPVGFWLVTPSNEFRHAGPIKQDLTSHVGPITLSMFVSTHYAGKEVTMAFNEGETYKKVFGPVFVYLNSAPNKSQFRSLWSDAVEQLSNEVRRWPYDFVGSKDFLPPNQRGTVAGQLLVQDGGQRAQPASNAYVGLALPGDAGSWQKESKGYQFWIQAGKDGHFLINNIVPGDYNLYAWVPGFIGDYRYTTKITIKPGGNINLDSLVYNPPRNGPTLWEIGIPDRSAAEYYIPDPNPKFMNRLFKNDSQDKFRQYGLWERYTELYPNDDLVYTVGAADYHNDWFYAQVTRSTAEKTFVPTTWQIQFQLKNIIMPGNYTLQVALVSATNARLEVRFNDPNAKLPLFSTGLIGDDNAIARHGIHGLYRLYTVAIGSNHLVKGKNIIYLTQSKGIGPFMGVMYDYVRLESPPINNT 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01918 536 CDD RGL4_M 232 329 IPR029413 -
Pumo11g01918 536 CDD RGL4_C 341 529 - -
Pumo11g01918 536 Gene3D - 228 328 - -
Pumo11g01918 536 Gene3D - 337 529 - -
Pumo11g01918 536 Pfam Polysaccharide lyase family 4, domain III 339 528 IPR029411 -
Pumo11g01918 536 CDD RGL4_N 7 198 - -
Pumo11g01918 536 SUPERFAMILY Galactose-binding domain-like 336 529 IPR008979 -
Pumo11g01918 536 Pfam Polysaccharide lyase family 4, domain II 253 325 IPR029413 -
Pumo11g01918 536 SUPERFAMILY Starch-binding domain-like 228 328 IPR013784 GO:0030246
Pumo11g01918 536 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 2 532 - -
Pumo11g01918 536 Gene3D - 2 208 IPR014718 GO:0030246
Pumo11g01918 536 SUPERFAMILY Galactose mutarotase-like 95 194 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pumo11g01918 536 Pfam Rhamnogalacturonate lyase family 2 99 IPR010325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01918 Pumo-Chr11 50984008 50987470 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01918 2 531 Polysaccharide Lyase AT1G09890 56.449 0.0 616
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01918 K18195 - gmx:100781089 1016.53