Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01890 ATGTCGGCGTCGACGGGAAACTGCAGCAAAATCCGGCGCATTGTGCGCGTGCGGCAGATGCTTCTCCGGTGGCGGAGGAAGGCGGGGCGGCTGGCGGCGTCGGACGTTCCGGCGGGACACGTGGCGGTGTGCGTGGGGCCCAGCAGGAGGAGGTTCATCGTGCGCGCTACGTACCTGAACCACCCGATTTTCAAGATTCTTCTGGTGAAAGCCGAAGAGGAGTATGGTTTCTGCAACCACGGTCCTCTCGCTATTCCCTGCGACGAGTCTCTATTCGAAGAGCTTCTTCGGGTCGTGGCCCGACCCGTACCCGTACCCGGATTCTCCACGCTCGAGGATTTACAGAGACGCTGCCACGTGGACGTACCCACTAGCTTTGACTTTGTAGGAGAATCGTGGCCGTTGCTTCGTGACGAGCCAATTTGCTAA 429 0.5991 MSASTGNCSKIRRIVRVRQMLLRWRRKAGRLAASDVPAGHVAVCVGPSRRRFIVRATYLNHPIFKILLVKAEEEYGFCNHGPLAIPCDESLFEELLRVVARPVPVPGFSTLEDLQRRCHVDVPTSFDFVGESWPLLRDEPIC 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01890 142 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 26 95 IPR003676 GO:0009733
Pumo11g01890 142 Pfam Auxin responsive protein 23 98 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01890 Pumo-Chr11 50665812 50666785 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01890 6 136 Calmodulin-binding Proteins AT4G34750 51.748 2.29e-40 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01890 K14488 - gmx:100795345 252.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01890 11 50665812 50666785 Pumo11g01890 11 50665812 50666785 ECH