Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01879 ATGCGAACCCTTTGCGACGCATGCGAGAGCGCCGCTGCCATTCTCTTCTGCGCCGCTGATGAGGCTGCTCTCTGCTCCGCTTGTGACCACAAGATCCATATGTGTAACAAACTTGCTAGTAGACACGTTCGGGTTGGCCTTGCTGACCCCACTGATGTTCCACGCTGTGACATATGTGAAAATGCACCTGCTTTCTTTTACTGCGAGATAGATGGTAGTTCACTATGTCTGCAATGTGATATGATTGTGCATGTTGGTGGTAAAAGAACCCATGAAAGATATCTTCTATTGAGGCAAAGAGTTCAGTTTCCAGATGATAAACCTGCCCAAATGGAAGAACTAGGGCTGCAACCTATGGATCAAAATGAATTGAGGAGGGATGAAAGTCAGCCACTCAAGCTAAAAACAAGAGATAGTCAGCAGAATCACAGTGTCTCACCTGTTCCAAGGCAAGAAAATAATATTGATGGCCATGCGAAAATGGATAAAAAGCTAATTGATCTTAATACCAGGCCACTGCGGTTAAATGGACCAGCATCAAACAACCAGGAACAAGGTATGGATATTTTAAGAGGCAATAATCATGAATCTGCGAGTGTGCCACCAGTAGAATCCTTCAAACAAGACGCTGAGAAGTAA 639 0.4444 MRTLCDACESAAAILFCAADEAALCSACDHKIHMCNKLASRHVRVGLADPTDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHERYLLLRQRVQFPDDKPAQMEELGLQPMDQNELRRDESQPLKLKTRDSQQNHSVSPVPRQENNIDGHAKMDKKLIDLNTRPLRLNGPASNNQEQGMDILRGNNHESASVPPVESFKQDAEK 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01879 212 Pfam B-box zinc finger 53 92 IPR000315 GO:0008270
Pumo11g01879 212 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Pumo11g01879 212 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 179 - -
Pumo11g01879 212 FunFam B-box zinc finger protein 19 2 92 - -
Pumo11g01879 212 MobiDBLite consensus disorder prediction 114 158 - -
Pumo11g01879 212 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pumo11g01879 212 MobiDBLite consensus disorder prediction 119 134 - -
Pumo11g01879 212 MobiDBLite consensus disorder prediction 172 212 - -
Pumo11g01879 212 CDD Bbox1_BBX-like 56 96 - -
Pumo11g01879 212 Gene3D Classic Zinc Finger 2 95 - -
Pumo11g01879 212 CDD Bbox1_BBX-like 4 47 - -
Pumo11g01879 212 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Pumo11g01879 212 SMART bboxneu5 1 47 IPR000315 GO:0008270
Pumo11g01879 212 SMART bboxneu5 51 96 IPR000315 GO:0008270
Pumo11g01879 212 MobiDBLite consensus disorder prediction 135 151 - -
Pumo11g01879 212 MobiDBLite consensus disorder prediction 174 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01879 Pumo-Chr11 50533353 50536160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01879 1 212 C2C2-CO-like Transcription Factor Family AT4G38960 58.019 2.14e-82 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Pumo11g01879 zf-B_box 3.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01879 - - gmx:100818604 412.149