Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo11g01879 | ATGCGAACCCTTTGCGACGCATGCGAGAGCGCCGCTGCCATTCTCTTCTGCGCCGCTGATGAGGCTGCTCTCTGCTCCGCTTGTGACCACAAGATCCATATGTGTAACAAACTTGCTAGTAGACACGTTCGGGTTGGCCTTGCTGACCCCACTGATGTTCCACGCTGTGACATATGTGAAAATGCACCTGCTTTCTTTTACTGCGAGATAGATGGTAGTTCACTATGTCTGCAATGTGATATGATTGTGCATGTTGGTGGTAAAAGAACCCATGAAAGATATCTTCTATTGAGGCAAAGAGTTCAGTTTCCAGATGATAAACCTGCCCAAATGGAAGAACTAGGGCTGCAACCTATGGATCAAAATGAATTGAGGAGGGATGAAAGTCAGCCACTCAAGCTAAAAACAAGAGATAGTCAGCAGAATCACAGTGTCTCACCTGTTCCAAGGCAAGAAAATAATATTGATGGCCATGCGAAAATGGATAAAAAGCTAATTGATCTTAATACCAGGCCACTGCGGTTAAATGGACCAGCATCAAACAACCAGGAACAAGGTATGGATATTTTAAGAGGCAATAATCATGAATCTGCGAGTGTGCCACCAGTAGAATCCTTCAAACAAGACGCTGAGAAGTAA | 639 | 0.4444 | MRTLCDACESAAAILFCAADEAALCSACDHKIHMCNKLASRHVRVGLADPTDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHERYLLLRQRVQFPDDKPAQMEELGLQPMDQNELRRDESQPLKLKTRDSQQNHSVSPVPRQENNIDGHAKMDKKLIDLNTRPLRLNGPASNNQEQGMDILRGNNHESASVPPVESFKQDAEK | 212 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo11g01879 | 212 | Pfam | B-box zinc finger | 53 | 92 | IPR000315 | GO:0008270 | |
Pumo11g01879 | 212 | Pfam | B-box zinc finger | 3 | 42 | IPR000315 | GO:0008270 | |
Pumo11g01879 | 212 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 179 | - | - | |
Pumo11g01879 | 212 | FunFam | B-box zinc finger protein 19 | 2 | 92 | - | - | |
Pumo11g01879 | 212 | MobiDBLite | consensus disorder prediction | 114 | 158 | - | - | |
Pumo11g01879 | 212 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 | |
Pumo11g01879 | 212 | MobiDBLite | consensus disorder prediction | 119 | 134 | - | - | |
Pumo11g01879 | 212 | MobiDBLite | consensus disorder prediction | 172 | 212 | - | - | |
Pumo11g01879 | 212 | CDD | Bbox1_BBX-like | 56 | 96 | - | - | |
Pumo11g01879 | 212 | Gene3D | Classic Zinc Finger | 2 | 95 | - | - | |
Pumo11g01879 | 212 | CDD | Bbox1_BBX-like | 4 | 47 | - | - | |
Pumo11g01879 | 212 | ProSiteProfiles | Zinc finger B-box type profile. | 51 | 96 | IPR000315 | GO:0008270 | |
Pumo11g01879 | 212 | SMART | bboxneu5 | 1 | 47 | IPR000315 | GO:0008270 | |
Pumo11g01879 | 212 | SMART | bboxneu5 | 51 | 96 | IPR000315 | GO:0008270 | |
Pumo11g01879 | 212 | MobiDBLite | consensus disorder prediction | 135 | 151 | - | - | |
Pumo11g01879 | 212 | MobiDBLite | consensus disorder prediction | 174 | 192 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo11g01879 | Pumo-Chr11 | 50533353 | 50536160 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo11g01879 | 1 | 212 | C2C2-CO-like Transcription Factor Family | AT4G38960 | 58.019 | 2.14e-82 | 241 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | DBB | Pumo11g01879 | zf-B_box | 3.4e-06 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo11g01879 | - | - | gmx:100818604 | 412.149 |