Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01870 ATGGAAGTTGCGGCGGCAAAAGCGCTTAAACCAAGCTTGCGGACAGAGTTTACTTTCTCGCAAGCAATTTACGACGAGATTTTGTGTTTTAACGCGAACAACACTGTTGCCGGTGAAGATTTTTCCGTTGACGACCTACTTGACTTTTCCAACGGCGAATTCCAAGTTGGAAAAGATTTCGATGACTACGAGGAAGAGGAAGAGGAAGACGAGGAAAAAGACAGTACCTCCGGTTCCTCGCAGTCGCAGGACCGAACCGAAGACGACAGCAACTCTAATTCCACCGTCGCCGGCGACTCCGACTCCGTTTTCGCCGACGAGTTGTCAGTTCCGGCGGATGATGTGGCGGACCTGGAGTGGGTTTCTCACTTTGTGGACGATTCCCTCCCGGAGCTATCTCTATTGTACCCCGTCCGTTCCGAGAAAACAAGGGTATGGGCGGAACCGGAACCGGAACCTAGACCGGGCCCAGCCCAAACCGTATCAGCGGTCCCAAGAAAGCCGAGAAGCGGAAAGACTAGAAAGCCCAACGCTCGTCTATGCTCCTTTACGGTCTCGCCGCCTTCGGTGTTGTCTGGCGAGCCGGCGGCTAAAAAGCAGAAGAAAAAGGCCGAGGCCCAAACCGGTGGGGCCCAGTTTCTGCGACGGTGCAGCCACTGCCAGGTGCAGAAAACGCCGCAGTGGAGGACCGGCCCACTGGGGCCCAAAACACTTTGCAACGCTTGCGGGGTTCGGTTCAAGTCCGGTCGGCTTTTTCCGGAGTATAGACCGGCCTGTAGCCCAACTTTCTCTGGCGATATTCACTCCAATAGTCATCGTAAAGTGTTAGAGATGAGACGGAAAAAGGAGATTGATGAACCGGTAACCGGTTTGGACCGGACTCAACTGGTCCCGAGTTGTTAA 903 0.5426 MEVAAAKALKPSLRTEFTFSQAIYDEILCFNANNTVAGEDFSVDDLLDFSNGEFQVGKDFDDYEEEEEEDEEKDSTSGSSQSQDRTEDDSNSNSTVAGDSDSVFADELSVPADDVADLEWVSHFVDDSLPELSLLYPVRSEKTRVWAEPEPEPRPGPAQTVSAVPRKPRSGKTRKPNARLCSFTVSPPSVLSGEPAAKKQKKKAEAQTGGAQFLRRCSHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGRLFPEYRPACSPTFSGDIHSNSHRKVLEMRRKKEIDEPVTGLDRTQLVPSC 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01870 300 MobiDBLite consensus disorder prediction 59 74 - -
Pumo11g01870 300 Gene3D - 212 285 IPR013088 GO:0006355|GO:0008270
Pumo11g01870 300 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 213 272 - -
Pumo11g01870 300 SMART GATA_3 211 265 IPR000679 GO:0006355|GO:0043565
Pumo11g01870 300 MobiDBLite consensus disorder prediction 147 176 - -
Pumo11g01870 300 MobiDBLite consensus disorder prediction 79 100 - -
Pumo11g01870 300 MobiDBLite consensus disorder prediction 55 103 - -
Pumo11g01870 300 ProSiteProfiles GATA-type zinc finger domain profile. 215 247 IPR000679 GO:0006355|GO:0043565
Pumo11g01870 300 CDD ZnF_GATA 216 273 IPR000679 GO:0006355|GO:0043565
Pumo11g01870 300 FunFam GATA transcription factor 205 292 - -
Pumo11g01870 300 PIRSF Txn_fac_GATA_plant 1 297 IPR016679 GO:0003677|GO:0005634|GO:0045893
Pumo11g01870 300 ProSitePatterns GATA-type zinc finger domain. 217 242 IPR000679 GO:0006355|GO:0043565
Pumo11g01870 300 Pfam GATA zinc finger 217 250 IPR000679 GO:0006355|GO:0043565
Pumo11g01870 300 PANTHER GATA TRANSCRIPTION FACTOR 32 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01870 Pumo-Chr11 50477409 50479032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01870 40 285 C2C2-Gata Transcription Factor Family AT4G36240 47.244 3.42e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pumo11g01870 GATA 3.3e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01870 - - gmx:100776188 462.611