Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01859 ATGAAGATCCAGTGTGATGTGTGTCACAAAGCAGTGGCCTCCTTGTTCTGCCCCTCAGATGAAGCAGCTCTCTGCCATGCTTGTGATCGCACCATCCACCTTGCCAACAAGCTCGCTGACAAACACAAACGCTTCTCTCTTCACCACCCCACTTCCAAACACTCCCCTCTTTGCGATATCTGTCATGAGAGGCGTGCATATGTATTTTGCAAAGAGGACAGAGCAATACTATGTAGAGAATGTGACCTTTCTATTCATGAGGTCAACGAACATACCAAGAAACACAACAGGTTTCTTCTCACTGGCGTAGGGATCGGTGCTGACGCTTCAGACCCAACATCATTTGACACTGCCACTGAAGAAAGAACAGCCTCTCGTTATAAAATAAACAGACCAAGTTCGTTGTCAAATGAAAACATCAGTTCTTCTCACACGGTTGGAGACAACATGGCTTGTGACACGGGTTCGGTTTCTACAAGCAGCATTTCTGAGTACTTGATTGAGACCATTCCCGGTTACTGCATGGAAGATCTTCTAGATGCTTCATTCGCATCAAATGGTTTCTCTAAGGATTATGAGCACCAATCAGCATTTCAGAACCAAGATGTTCAAGTCAGCATGTGTTCGTTCCCACTGCAAGCGTGGGTGCCACAATCTCAAGGTGGATCCCCTCAACTTAGCACTACTTCGAATCTTCATCCTCAGATTGATTCTTTAGTTGGAGTTATGGAAATGCCTAAAGCCAAAGCAGGTGAAGGATACTCCAATTGGATATATAATTATGACTACTCAGCCTACGAAGTTCCTTCAATTAGTCCTCCATTGATCAAAAAATGTAAACGCTCTCGTTAA 852 0.4437 MKIQCDVCHKAVASLFCPSDEAALCHACDRTIHLANKLADKHKRFSLHHPTSKHSPLCDICHERRAYVFCKEDRAILCRECDLSIHEVNEHTKKHNRFLLTGVGIGADASDPTSFDTATEERTASRYKINRPSSLSNENISSSHTVGDNMACDTGSVSTSSISEYLIETIPGYCMEDLLDASFASNGFSKDYEHQSAFQNQDVQVSMCSFPLQAWVPQSQGGSPQLSTTSNLHPQIDSLVGVMEMPKAKAGEGYSNWIYNYDYSAYEVPSISPPLIKKCKRSR 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01859 283 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pumo11g01859 283 Pfam B-box zinc finger 56 93 IPR000315 GO:0008270
Pumo11g01859 283 CDD Bbox1_BBX-like 5 47 - -
Pumo11g01859 283 CDD Bbox1_BBX-like 57 100 - -
Pumo11g01859 283 SMART bboxneu5 53 100 IPR000315 GO:0008270
Pumo11g01859 283 SMART bboxneu5 4 47 IPR000315 GO:0008270
Pumo11g01859 283 FunFam B-box zinc finger protein 21 1 98 - -
Pumo11g01859 283 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Pumo11g01859 283 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 237 - -
Pumo11g01859 283 Gene3D Classic Zinc Finger 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01859 Pumo-Chr11 50374056 50375851 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01859 1 283 C2C2-CO-like Transcription Factor Family AT1G75540 37.425 2.69e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Pumo11g01859 zf-B_box 7.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01859 - - gmx:100790232 517.309