Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01856 ATGGAAGCCCAAGAAGTAGTGGTAAAGGGATCAAAGTGTCAAGACTGTGGGAACCAAGCGAAGAAGGATTGTGCATACTCAAGGTGCAGAACTTGCTGCAAGAACAAAGGGTTTAAGTGTCAAACCCATGTCAGAAGCACTTGGATTCCTGTTGATAAAAGGCGCCAGAAAGTGGAGCAGCAACCTCCCACTACTAATCTTCAGGGAGATATTCCCAAAAGGCACAAGCACAACCCATATTCAAGTTTAGAGGAGTTCAAATTTCCAGCTGTTATGAGTTCCATGTCGTTATTCAGCTGCGTTCAGGTGCGTTCTATGGATGACACGGTTAATGAAATTGCATATCAAACATCTGTGAACATTGGAGGACATGTATTTAGTGGTCTTCTTTATGATCAAGGCCCTGAACAAAGCTTCAATGCTAGGGGTGACAACAGCTCCATAGACCCTCTTGATCAACAACACAGTCTCAATCTTATGAGTGCTTCAATCCACACTCGTGATGGTGCAAGTGCAACTATGCCTCCTACTATCAGCCACTGCTGCTCAGGAACCATTTTCTTCCTCCACCACATCCATTTCCCCTAG 588 0.4473 MEAQEVVVKGSKCQDCGNQAKKDCAYSRCRTCCKNKGFKCQTHVRSTWIPVDKRRQKVEQQPPTTNLQGDIPKRHKHNPYSSLEEFKFPAVMSSMSLFSCVQVRSMDDTVNEIAYQTSVNIGGHVFSGLLYDQGPEQSFNARGDNSSIDPLDQQHSLNLMSASIHTRDGASATMPPTISHCCSGTIFFLHHIHFP 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01856 195 NCBIfam putative zinc finger domain, LRP1 type 12 54 IPR006510 -
Pumo11g01856 195 Pfam Domain of unknown function (DUF702) 10 136 - -
Pumo11g01856 195 MobiDBLite consensus disorder prediction 55 76 - -
Pumo11g01856 195 NCBIfam LRP1 C-terminal domain 87 135 IPR006511 -
Pumo11g01856 195 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 9 170 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01856 Pumo-Chr11 50345781 50346722 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01856 13 175 C2H2 Transcription Factor Family AT3G51060 44.086 9.85e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Pumo11g01856 DUF702 1.1e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01856 - - gsj:114376985 300.441