Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01855 ATGGCTTCCGATTCTTCTCCCCCGAATTTCAACAACGGACCTTCCTCCCCCGACGACTCCCCTTCCAGTCCTATCGGCAACACCTTCTCGTCGCCGGGGAGTAGACGCCGCCGCCGCTCTTCCACCCCCTCCGCATTCGCCACCCCGTCGGAGCGCCGGTCCCGATTCGCCTCCTCCGATGCCACTCCAACCGCGCCGCGCTCCCGCCAGAGAGGCGCCGGCGCCGGCGGGCGCGTTCCCGCCACGCCCACCTCCACCACCGACGACGTGCCGGTCTCGTCGGACGGCGGCGACGGCTTCGACATGGACGACGCCAGGCCCACCTTCGTGTGGGGCACCAACATAAGCGTGGAAGACGTGAACGACGCGATTAAAAGGTTTCTGAGGAACTTCAGAGAAGCGTCTTCGTCGTCGCAGGGCAACGACGATGACGGGTTGTTGCACACTGAAGGGAAGTACGAGAAACTGATCAGACAGGTTATTGAAGTTGAAGGAGATTCTCTTGATGTTGATGCGCGTGACGTGTTTGATCATGACCCTGATTTGTACACTAAGATGGTTAGGTACCCTCTCGAGGTGCTTGCCATCTTTGACTTGGTTTTGATGAACATGGTTAGCGTATTGAAGCCTATGTTCGAGAAGCACATTCAGACCCGTATTTTCAATCTCAGAACCTCAACCTCAATGAGAAATTTGAACCCCTCTGATATTGAGAGGATGGTATCACTGAAGGGAATGGTTATAAGATGCAGCTCAATCATACCAGAGATTAGGGAAGCTATATTTAGGTGTCTTGTGTGTGGATTCTGCTCTGAGCCAGTTCCTGTGGAGAGAGGGCGAATAACCGAACCGACTATATGTTTGAGGGAAGAGTGCCAATCTAGAAACTCCATGACGCTGGTTCACAACAGATGCAGGTTTGCTGATAAGCAAATTGTGAGGGTCCAGGAGACACCTGACGAGATTCCTGAAGGAGGAACACCTCACACAGTTAGCTTGCTGATGCATGACAAGTTGGTGGATAGTTCGAAGCCAGGTGACAGAGTTGAGGTGACTGGTATTTATAGGGCTATGAGTGTCAGGGTTGGACCAACGCAGAGAACTGTTAAGTCATTGTTCAAGACGTATATTGATTGTCTTCACATAAAGAAGACCTGA 1158 0.5268 MASDSSPPNFNNGPSSPDDSPSSPIGNTFSSPGSRRRRRSSTPSAFATPSERRSRFASSDATPTAPRSRQRGAGAGGRVPATPTSTTDDVPVSSDGGDGFDMDDARPTFVWGTNISVEDVNDAIKRFLRNFREASSSSQGNDDDGLLHTEGKYEKLIRQVIEVEGDSLDVDARDVFDHDPDLYTKMVRYPLEVLAIFDLVLMNMVSVLKPMFEKHIQTRIFNLRTSTSMRNLNPSDIERMVSLKGMVIRCSSIIPEIREAIFRCLVCGFCSEPVPVERGRITEPTICLREECQSRNSMTLVHNRCRFADKQIVRVQETPDEIPEGGTPHTVSLLMHDKLVDSSKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKT 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01855 385 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 251 264 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Pumo11g01855 385 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 302 314 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Pumo11g01855 385 MobiDBLite consensus disorder prediction 1 101 - -
Pumo11g01855 385 FunFam DNA helicase 256 308 - -
Pumo11g01855 385 Pfam MCM N-terminal domain 123 225 IPR027925 -
Pumo11g01855 385 SMART mcm 225 385 IPR031327 GO:0003677|GO:0005524|GO:0032508
Pumo11g01855 385 SUPERFAMILY Nucleic acid-binding proteins 148 379 IPR012340 -
Pumo11g01855 385 MobiDBLite consensus disorder prediction 1 66 - -
Pumo11g01855 385 Pfam MCM OB domain 229 358 IPR033762 -
Pumo11g01855 385 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 121 383 IPR031327 GO:0003677|GO:0005524|GO:0032508
Pumo11g01855 385 Gene3D - 114 224 - -
Pumo11g01855 385 Gene3D - 256 308 - -
Pumo11g01855 385 Gene3D - 229 368 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01855 Pumo-Chr11 50337497 50339845 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01855 1 384 Core DNA Replication Machinery Family AT2G16440 66.834 6.87e-175 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01855 K02212 - gmx:100805788 668.307