Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01854 ATGTTGGTAGAAGATGCTATGGATGTTGATAATGGCCCAGACAGAAATGCAGAAGTTCTCTTTGATGAAGAAAAGGTGGCTCAACTGAAGGAGCTCTCAAAACGGCCAGATATGTATGAAATACTGACAAAGTCATTGGCTCCAAACATCTGGGAGCTAGATGATGTGAAGAAAGGTCTTCTTTGTCAGCTTTTTGGTGGCAACGCTTTGACGTTAGCTTCTGGTGCTAACTTTCGCGGCGATATAAATATTCTTCTCGTTGGTGATCCTGGGACAAGCAAGTCCCAGCTACTTCAATACATACACAAACTATCTCCACGTGGAATTTACACCAGTGGAAGGGGAAGTTCAGCAGTCGGATTGACTGCTTATGTAACCAAGGACCCTGAAACAGGAGAAACTGTTTTAGAGAGTGGTGCCCTCGTTTTGAGTGACCGAGGTATATGTTGTATTGACGAATTCGACAAAATGTCTGACAATGCAAGGAGCATGTTACATGAGGTGATGGAACAACAAACCGTTTCAATAGCAAAGGCAGGTATTATTGCTTCCCTCAGTGCTAGGACCTCGGTGTTGGCTTGTGCAAATCCAAGTGGGTCAAGATATAATCCTCGCTTGTCTGTCATTGACAACATACACCTTCCTCCCACTCTTTTGTCCAGATTTGATTTAATCTACTTGATGCTTGACAAGGCTGATGAACAGACTGACAGGCGCCTTGCCAAACATATTGTGTCCCTACACTTTGAGAATCCCGAGAACGTGGAGCAGGATGTGTTGGACATTTCTACATTAACTGATTATGTTAGCTATGCCCGAAAGCACATACACCCACAACTTTCTGATGAAGCTGCTGAAGAATTGACTAGAGGTTACGTAGAAATAAGAAAAAGAGGAAATTTTCCCGGGAGTAGCAAAAAGGTGATAACAGCAACACCAAGGCAGATTGAGAGTCTGATACGCCTAAGTGAAGCATTGGCTAGGATGCGCTTCTCTGAATGGGTTGAAAAGCAGTGA 1017 0.4366 MLVEDAMDVDNGPDRNAEVLFDEEKVAQLKELSKRPDMYEILTKSLAPNIWELDDVKKGLLCQLFGGNALTLASGANFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLSARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLMLDKADEQTDRRLAKHIVSLHFENPENVEQDVLDISTLTDYVSYARKHIHPQLSDEAAEELTRGYVEIRKRGNFPGSSKKVITATPRQIESLIRLSEALARMRFSEWVEKQ 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01854 338 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 337 IPR027417 -
Pumo11g01854 338 PRINTS Mini-chromosome maintenance (MCM) protein family signature 218 226 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo11g01854 338 PRINTS Mini-chromosome maintenance (MCM) protein family signature 139 153 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo11g01854 338 PRINTS Mini-chromosome maintenance (MCM) protein family signature 191 203 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo11g01854 338 PRINTS Mini-chromosome maintenance (MCM) protein family signature 79 94 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo11g01854 338 PRINTS Mini-chromosome maintenance (MCM) protein family signature 167 180 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo11g01854 338 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 200 217 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Pumo11g01854 338 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 54 65 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Pumo11g01854 338 FunFam DNA helicase 19 338 - -
Pumo11g01854 338 SMART mcm 1 338 IPR031327 GO:0003677|GO:0005524|GO:0032508
Pumo11g01854 338 Pfam MCM AAA-lid domain 264 337 IPR041562 -
Pumo11g01854 338 Gene3D - 19 338 IPR027417 -
Pumo11g01854 338 ProSiteProfiles MCM family domain profile. 38 244 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo11g01854 338 Pfam MCM P-loop domain 26 248 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo11g01854 338 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 18 338 IPR031327 GO:0003677|GO:0005524|GO:0032508
Pumo11g01854 338 ProSitePatterns MCM family signature. 147 155 IPR018525 GO:0003677|GO:0005524|GO:0006260
Pumo11g01854 338 CDD MCM4 41 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01854 Pumo-Chr11 50335370 50337486 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01854 1 338 Core DNA Replication Machinery Family AT2G16440 86.136 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01854 K02212 - gmx:100782586 645.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01854 11 50335370 50337486 Pumo11g01854 11 50335370 50337486 ECH