Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01839 ATGACCAAGATCCTCATGGCAACAGCACTTTCTAGGCTGGTGCTCACTGATCATAGCAAACTTACCCTTGGACAAGATGGGGCAATTGAGCCCCTTGTGAAAATGTTCAATTCTGGGAAACTTGAGTCCAAGTTATCAGCTCTAAATGCACTGCAAAACCTTTCCAGCTCGACAGAAAATGTGCAACGTTTGATCGGAACTGGAATTGTAGGATCTCTGCTGCAACTTCTTTTCTCTGTAACATCTGTGCTCATGACTCTGCGGGAGCCTGCATCAGCTATTCTTGCAAGAATTGCAGAGTCAGAAACTGTTCTTGTCAATAAAGGTGTGGCTCAGCAGATGCTCTCACTTTTGAATCTTTCCAGCCCTGTGATACAAGGTCATCTATTAGAAGCCCTAAATAGCATTGCTGCTCATCCTTATGCTTCAAAAGTAAGAAGAAAAATGAAGGAAAAAGGTGCACTTCAGCTAATTTTACCCCTTTTGAAGGAAACAAAAATTAAAATAAGGAGCAAGGCATTGAATTTGCTGTATACTCTCTCCGAAGATCTAACAGATGAGTTGACTACACATTTTGATGAAACTCATCTTTTTGATATTGTTAACATTGTCTTATCATCATCAGATAGTGAAAAGGCTGCTGCTGTTGGCATACTGAGTAATCTTCCTGTTAGTGATAAAAAAGTGACAGATGTACTGAAGAGAGCAAATTTATTGCCCATTTTGGTATCCATTATGGATTCAGGCACAGGAAGTAACTCACCCACAAAAAGTATCTTAATGGAGAGTATTGCAGGTGTGGCAATCCGGTTCACAAGTCCCTCTGACAAGAAACTGCAACTTCTTTCAGCACAACATGGGGTGATTCCTTTGCTTGTAAAACTGCTCTCAAGGGGTTCGGCAAACACAAAATTCAGAGCCGCAACCGCTCTCGCTCAACTGTCACAGAATTCTCTTTCTCTTAGGAGGTCTAGGAAGTCAAGGTGGTTGTGTGTTGCTCCCTCAGTGGATGCATATTGTGAAGTTCATGATGGTTATTGCTGTGTGAACAGCACATTTTGCCTGATCAAGGCAGGGGCTGTTTCTCCCCTTATCCAAATACTGGAAGATAAGGATTGGGAAGCAGTGGAAGCTGCTTTGAATGCCCTTTCAACTCTATTGCAAGATGAAATCTGGGAAGGTGGTGCCAATTGCATAGCCAAATTGTCAGGTGTACAAGCTATTGTAAACATATTAGAAGCAGGCGATGCGAAGGTTCAAGAAAAAGCACTATGGATGTTGGAGAGAATATTCAGGGTTGAAGAACATAGAATGAAATATGGAGAATTCTCTCAGGTGGTTCTTATTGATCTGGCACAGAGGAGTGATTCTAGATTGAAGTCAACAGTTGCAAAAGTTTTGGCAGTGCTGGAGCTCCTACTAGTTCAATCCAGTTATTTCTGA 1443 0.4179 MTKILMATALSRLVLTDHSKLTLGQDGAIEPLVKMFNSGKLESKLSALNALQNLSSSTENVQRLIGTGIVGSLLQLLFSVTSVLMTLREPASAILARIAESETVLVNKGVAQQMLSLLNLSSPVIQGHLLEALNSIAAHPYASKVRRKMKEKGALQLILPLLKETKIKIRSKALNLLYTLSEDLTDELTTHFDETHLFDIVNIVLSSSDSEKAAAVGILSNLPVSDKKVTDVLKRANLLPILVSIMDSGTGSNSPTKSILMESIAGVAIRFTSPSDKKLQLLSAQHGVIPLLVKLLSRGSANTKFRAATALAQLSQNSLSLRRSRKSRWLCVAPSVDAYCEVHDGYCCVNSTFCLIKAGAVSPLIQILEDKDWEAVEAALNALSTLLQDEIWEGGANCIAKLSGVQAIVNILEAGDAKVQEKALWMLERIFRVEEHRMKYGEFSQVVLIDLAQRSDSRLKSTVAKVLAVLELLLVQSSYF 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01839 480 Gene3D - 338 472 IPR011989 -
Pumo11g01839 480 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 27 69 IPR000225 GO:0005515
Pumo11g01839 480 Pfam Armadillo/beta-catenin-like repeat 17 56 IPR000225 GO:0005515
Pumo11g01839 480 Gene3D - 2 328 IPR011989 -
Pumo11g01839 480 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 480 - -
Pumo11g01839 480 SMART arm_5 392 432 IPR000225 GO:0005515
Pumo11g01839 480 SMART arm_5 276 316 IPR000225 GO:0005515
Pumo11g01839 480 SMART arm_5 348 388 IPR000225 GO:0005515
Pumo11g01839 480 SMART arm_5 57 100 IPR000225 GO:0005515
Pumo11g01839 480 SMART arm_5 16 56 IPR000225 GO:0005515
Pumo11g01839 480 SMART arm_5 142 182 IPR000225 GO:0005515
Pumo11g01839 480 SUPERFAMILY ARM repeat 3 435 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01839 Pumo-Chr11 50255302 50256965 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01839 2 480 U-box Gene Family AT1G20780 28.932 1.24e-30 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01839 K08332 - gmx:102659538 788.104