LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo11g01839	ATGACCAAGATCCTCATGGCAACAGCACTTTCTAGGCTGGTGCTCACTGATCATAGCAAACTTACCCTTGGACAAGATGGGGCAATTGAGCCCCTTGTGAAAATGTTCAATTCTGGGAAACTTGAGTCCAAGTTATCAGCTCTAAATGCACTGCAAAACCTTTCCAGCTCGACAGAAAATGTGCAACGTTTGATCGGAACTGGAATTGTAGGATCTCTGCTGCAACTTCTTTTCTCTGTAACATCTGTGCTCATGACTCTGCGGGAGCCTGCATCAGCTATTCTTGCAAGAATTGCAGAGTCAGAAACTGTTCTTGTCAATAAAGGTGTGGCTCAGCAGATGCTCTCACTTTTGAATCTTTCCAGCCCTGTGATACAAGGTCATCTATTAGAAGCCCTAAATAGCATTGCTGCTCATCCTTATGCTTCAAAAGTAAGAAGAAAAATGAAGGAAAAAGGTGCACTTCAGCTAATTTTACCCCTTTTGAAGGAAACAAAAATTAAAATAAGGAGCAAGGCATTGAATTTGCTGTATACTCTCTCCGAAGATCTAACAGATGAGTTGACTACACATTTTGATGAAACTCATCTTTTTGATATTGTTAACATTGTCTTATCATCATCAGATAGTGAAAAGGCTGCTGCTGTTGGCATACTGAGTAATCTTCCTGTTAGTGATAAAAAAGTGACAGATGTACTGAAGAGAGCAAATTTATTGCCCATTTTGGTATCCATTATGGATTCAGGCACAGGAAGTAACTCACCCACAAAAAGTATCTTAATGGAGAGTATTGCAGGTGTGGCAATCCGGTTCACAAGTCCCTCTGACAAGAAACTGCAACTTCTTTCAGCACAACATGGGGTGATTCCTTTGCTTGTAAAACTGCTCTCAAGGGGTTCGGCAAACACAAAATTCAGAGCCGCAACCGCTCTCGCTCAACTGTCACAGAATTCTCTTTCTCTTAGGAGGTCTAGGAAGTCAAGGTGGTTGTGTGTTGCTCCCTCAGTGGATGCATATTGTGAAGTTCATGATGGTTATTGCTGTGTGAACAGCACATTTTGCCTGATCAAGGCAGGGGCTGTTTCTCCCCTTATCCAAATACTGGAAGATAAGGATTGGGAAGCAGTGGAAGCTGCTTTGAATGCCCTTTCAACTCTATTGCAAGATGAAATCTGGGAAGGTGGTGCCAATTGCATAGCCAAATTGTCAGGTGTACAAGCTATTGTAAACATATTAGAAGCAGGCGATGCGAAGGTTCAAGAAAAAGCACTATGGATGTTGGAGAGAATATTCAGGGTTGAAGAACATAGAATGAAATATGGAGAATTCTCTCAGGTGGTTCTTATTGATCTGGCACAGAGGAGTGATTCTAGATTGAAGTCAACAGTTGCAAAAGTTTTGGCAGTGCTGGAGCTCCTACTAGTTCAATCCAGTTATTTCTGA	1443	0.4179	MTKILMATALSRLVLTDHSKLTLGQDGAIEPLVKMFNSGKLESKLSALNALQNLSSSTENVQRLIGTGIVGSLLQLLFSVTSVLMTLREPASAILARIAESETVLVNKGVAQQMLSLLNLSSPVIQGHLLEALNSIAAHPYASKVRRKMKEKGALQLILPLLKETKIKIRSKALNLLYTLSEDLTDELTTHFDETHLFDIVNIVLSSSDSEKAAAVGILSNLPVSDKKVTDVLKRANLLPILVSIMDSGTGSNSPTKSILMESIAGVAIRFTSPSDKKLQLLSAQHGVIPLLVKLLSRGSANTKFRAATALAQLSQNSLSLRRSRKSRWLCVAPSVDAYCEVHDGYCCVNSTFCLIKAGAVSPLIQILEDKDWEAVEAALNALSTLLQDEIWEGGANCIAKLSGVQAIVNILEAGDAKVQEKALWMLERIFRVEEHRMKYGEFSQVVLIDLAQRSDSRLKSTVAKVLAVLELLLVQSSYF	480

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo11g01839	480	Gene3D	-	338	472	IPR011989	-
	Pumo11g01839	480	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	27	69	IPR000225	GO:0005515
	Pumo11g01839	480	Pfam	Armadillo/beta-catenin-like repeat	17	56	IPR000225	GO:0005515
	Pumo11g01839	480	Gene3D	-	2	328	IPR011989	-
	Pumo11g01839	480	PANTHER	RING-TYPE E3 UBIQUITIN TRANSFERASE	1	480	-	-
	Pumo11g01839	480	SMART	arm_5	392	432	IPR000225	GO:0005515
	Pumo11g01839	480	SMART	arm_5	276	316	IPR000225	GO:0005515
	Pumo11g01839	480	SMART	arm_5	348	388	IPR000225	GO:0005515
	Pumo11g01839	480	SMART	arm_5	57	100	IPR000225	GO:0005515
	Pumo11g01839	480	SMART	arm_5	16	56	IPR000225	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo11g01839	Pumo-Chr11	50255302	50256965	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo11g01839	2	480	U-box Gene Family	AT1G20780	28.932	1.24e-30	124

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo11g01839	K08332		-	gmx:102659538	788.104

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