Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01812 ATGGCAATGATAAAAGAGAATATTGAAGTGAGCCTTGGGAGGAGCCAGATGTCCATGGCAGAAGACGACGAAGAGAGGTTGCTGCAGCCTGCAGCAGCAAGCAGTGGCGATGATAACCACCAGCAGCAGTTACCACAACAAGAAGTTGGTGAAAATACTACAATCAACACTACAAAGAGAAGCTCAAGATTTCGCACCGTTAGCAGACATAGATGGACTGGTCGGTATGAAGCTCACTTGTGGGACAAACTCTCTTGGAACGTAACACAAAAGAAGAAAGGGAAGAAAGGGGCTTATGATGAGGAAGAATCTGCTGCCACAGCATATGATTTAGCTGCACTTAAGTATTGGGGAACTTCAACTTTCACCAATTTTCCAATATCACATTATGAGAAAGAGATAAAACTAATGCAGACTATGACCAACGAGGAGTATTTGGCCACTTTAAGGAGAAAGAGCAGTGGCTTTTCAAGAGGTGTATCAAGACACTACTTTTGTACAATGCAAATACGCATCACCAACGTCGACGGAACAGACTCTTCCACCAACAAAGACGAGCCCTACGTGTCCTCTACGCGCCGCCGAGTCGAAAAATTCGTTAAAGAGATTACCATGGAAGGCAGCGTTCTTTTAGGAAAAGAAGAAGGTTCGAGTTCGGCACCAGATCTCCAACGAGTCGACGGCGGCGGCATACGAGAGTGTGCTTTGGCAATAAATTTCGAAGAAAGAGGCAGAGGTCGTGGAGATGTGGGCGGCGCCGGCAGAGATAAGGGACCAGTCACGCCACTTGCTATTGTGGTTCGGAACCTACGACACTGCTGA 822 0.4684 MAMIKENIEVSLGRSQMSMAEDDEERLLQPAAASSGDDNHQQQLPQQEVGENTTINTTKRSSRFRTVSRHRWTGRYEAHLWDKLSWNVTQKKKGKKGAYDEEESAATAYDLAALKYWGTSTFTNFPISHYEKEIKLMQTMTNEEYLATLRRKSSGFSRGVSRHYFCTMQIRITNVDGTDSSTNKDEPYVSSTRRRVEKFVKEITMEGSVLLGKEEGSSSAPDLQRVDGGGIRECALAINFEERGRGRGDVGGAGRDKGPVTPLAIVVRNLRHC 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01812 273 Gene3D AP2/ERF domain 62 128 IPR036955 GO:0003700|GO:0006355
Pumo11g01812 273 ProSiteProfiles AP2/ERF domain profile. 63 126 IPR001471 GO:0003700|GO:0006355
Pumo11g01812 273 MobiDBLite consensus disorder prediction 34 62 - -
Pumo11g01812 273 SMART rav1_2 63 132 IPR001471 GO:0003700|GO:0006355
Pumo11g01812 273 Pfam AP2 domain 63 118 IPR001471 GO:0003700|GO:0006355
Pumo11g01812 273 MobiDBLite consensus disorder prediction 14 62 - -
Pumo11g01812 273 CDD AP2 62 128 IPR001471 GO:0003700|GO:0006355
Pumo11g01812 273 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 40 163 - -
Pumo11g01812 273 SUPERFAMILY DNA-binding domain 63 128 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01812 Pumo-Chr11 49979589 49982664 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01812 59 185 AP2-EREBP Transcription Factor Family AT5G17430 56.934 2.24e-39 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo11g01812 AP2 2e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01812 - - gmx:100792612 270.396