Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01811 ATGTTGCATTGTCTCAACACTTCGGGGAATCTAGGAGCGACCTGTTCGGACATGACAGTCTTGGAAAGACAACGGGAAGCTACCATCAAGTGGCAACAACACCACGAGAATCACCAACCCTACTTAACGGACTTTAACGTTAACGCTGCCGTCTTCTCTTCTTCTCAGAGTCAGGGCTTGGTCATGATGTGCTCTGATTCCGCGCTCGGGGAGGTCCTAACTCACTCCGTTAAACCCGACCCGGGTGCTGTCTGGAGCGAATTCGGATCCTCTTCCGGTTTTCTACCCGCCATTTCGAGAACTTGCAGCAGAGACGGAGACTTGGTTTCGCCCTCGCCCAAGGAAAACGTGGCGAGTGCTAAGAAGAGAAAGGCTCAGAACTCCAAGGTTGTTGTTGCGGAGAGTGATAACAAGGACAAGAGAGTCAAAGTAAGTGCTGAAGAAGGAGAATCCAAAGTAACAGAGCAAACCAGCAACAAGAATAGCAAATCCAACGCAAATAGAAACAACAACAACAACAACAGAGAAACCTCTGCGGACACTTCCAAGGATAATTCGAAAGGCTCCGAGGTTCAAAACCAGAAGCCTGAGTACATTCATGTCCGAGCGCGTCGTGGCCAAGCCACCGATAGTCATAGCTTAGCTGAAAGAGTTAGGAGGGAGAAGATTAGCGAGAGAATGAAGTATTTGCAAGATTTAGTACCGGGTTGCAACAAAATTGCAGGCAAAGCTGGAATGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAACGCCAAGTTGAGTTCTTGTCAATGAAATTAGCGGCTGTAAACCCAAGGCTTGACTTCAACATTGACGAACTGTTTGCCAAAGAGGTGTTTCCTTCTTGTGGTCAAAGTTTTCCAAATATAGGGATGGCATCAGATATGAGTATGAGTAACAACCCTGCGTACCATCTTCAATTCAATTCAGCGCAGCAACTTGTATCGTGCTGTGGTGGATTAATAAACAACATGGGGATAAGCCCTCCCAATATGGGACTTCGAAGGAACATTAGTTCTAGCCCTGTACCTTTGCCCGAAACGTTTCTTGACTCGTCCTGTTACACTCAAATTCTACCCTCCTCAAATTGGGAAGGTGATTTCCAAAGCCTTTACAACGTTGCTTTTGATCAAGGGCGAACAGCATCCTTTCCTTCTCAGCCATTTACAGGTCTAGTTGAAGCTAGCAATTTAAAGATGGAGATGTAA 1233 0.459 MLHCLNTSGNLGATCSDMTVLERQREATIKWQQHHENHQPYLTDFNVNAAVFSSSQSQGLVMMCSDSALGEVLTHSVKPDPGAVWSEFGSSSGFLPAISRTCSRDGDLVSPSPKENVASAKKRKAQNSKVVVAESDNKDKRVKVSAEEGESKVTEQTSNKNSKSNANRNNNNNNRETSADTSKDNSKGSEVQNQKPEYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIDELFAKEVFPSCGQSFPNIGMASDMSMSNNPAYHLQFNSAQQLVSCCGGLINNMGISPPNMGLRRNISSSPVPLPETFLDSSCYTQILPSSNWEGDFQSLYNVAFDQGRTASFPSQPFTGLVEASNLKMEM 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01811 410 MobiDBLite consensus disorder prediction 103 215 - -
Pumo11g01811 410 MobiDBLite consensus disorder prediction 155 193 - -
Pumo11g01811 410 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 205 276 IPR036638 GO:0046983
Pumo11g01811 410 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 118 319 IPR024097 GO:0006355
Pumo11g01811 410 Gene3D - 204 278 IPR036638 GO:0046983
Pumo11g01811 410 Pfam Helix-loop-helix DNA-binding domain 211 258 IPR011598 GO:0046983
Pumo11g01811 410 MobiDBLite consensus disorder prediction 197 215 - -
Pumo11g01811 410 FunFam Basic helix-loop-helix transcription factor 204 276 - -
Pumo11g01811 410 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 207 257 IPR011598 GO:0046983
Pumo11g01811 410 SMART finulus 213 263 IPR011598 GO:0046983
Pumo11g01811 410 CDD bHLH_AtBPE_like 197 282 - -
Pumo11g01811 410 MobiDBLite consensus disorder prediction 117 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01811 Pumo-Chr11 49972531 49975411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01811 9 380 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 39.370 4.69e-59 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo11g01811 HLH 3.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01811 - - gmx:100794256 668.307