Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01806 ATGGCTTCTGCAGATGTTGAGTACCGATGCTTCGTTGGTGGGCTCGCTTGGGCCACTGACAACGATGCTCTCGAGAAAGCGTTCTCTCACTACGGCAGCGTTGTTGAATCGAAGATTATCAATGATCGTGAGACTGGAAGGTCCAGGGGATTTGGATTTGTTACCTTCGCCTCGGAGCATTCAATGAGAGATGCGATCGAAGGGATGAACGGTCAGAACCTTGACGGACGTAACATCACTGTGAACGAAGCTCAGTCCCGCGGCAGCCGCGGTTACGGAAATGGCGGTGGATACAGCCGTAATGGTGGAGGCTACGGAGGTGGTGGTTATGGCGGTGACAGAGACCGTGGTTACGGTGACGGTGGTTCACGCTACTCTCGCGGTGGTGATGCCAATGGAAGCTGGATAAATTAG 414 0.5362 MASADVEYRCFVGGLAWATDNDALEKAFSHYGSVVESKIINDRETGRSRGFGFVTFASEHSMRDAIEGMNGQNLDGRNITVNEAQSRGSRGYGNGGGYSRNGGGYGGGGYGGDRDRGYGDGGSRYSRGGDANGSWIN 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01806 137 MobiDBLite consensus disorder prediction 73 89 - -
Pumo11g01806 137 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Pumo11g01806 137 SMART rrm1_1 9 82 IPR000504 GO:0003723
Pumo11g01806 137 SUPERFAMILY RNA-binding domain, RBD 8 116 IPR035979 GO:0003676
Pumo11g01806 137 MobiDBLite consensus disorder prediction 68 106 - -
Pumo11g01806 137 FunFam Glycine-rich RNA-binding protein GRP1A 2 113 - -
Pumo11g01806 137 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 5 130 - -
Pumo11g01806 137 Gene3D - 2 107 IPR012677 -
Pumo11g01806 137 CDD RRM2_NsCP33_like 9 84 - -
Pumo11g01806 137 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01806 Pumo-Chr11 49920380 49921401 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01806 11 90 Eukaryotic Initiation Factors Gene Family AT4G34110 36.250 9.21e-11 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01806 - K13195 gmx:112998378 170.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01806 11 49920380 49921401 Pumo11g01806 11 49920380 49921401 ECH