Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01805 ATGGCTTCTGCAGATGTTGAGTACCGTTGCTTTGTAGGTGGGCTTGCTTGGGCCACCGACAACGATGCCCTTGAGAAAGCCTTTTCCGCCTACGGCGACATTGTTGAATCGAAGGTTATCAACGATCGTGAGACTGGAAGGTCGAGAGGATTCGGATTTGTGACCTTCGCCTCGGAGCAGTCAATGAAAGATGCGATCGAAGGAATGAACGGTCAGGACCTTGACGGCCGTAACATCACTGTCAACGAAGCTCAGACTCGTGGCAGCCGCGGTGGCGGCGGAGGCGGTGGTTACGGAAGTGGCGGTGGATACAGCCGCGGTGGTGGTGGTGGCGGTGGTTACGGTGGTCGTCGTGAAGGTGGATACAACCGTAACGGTGGAGGTGGGGGTTATGGCGGTGGCAGAGACCGTGGTTACGGTGATGGTGGATCTCGCTACTCTCGCGGTGGCGAAGGCGGTGGATCCGATGGAAGCTGGAGAAATTAG 486 0.572 MASADVEYRCFVGGLAWATDNDALEKAFSAYGDIVESKVINDRETGRSRGFGFVTFASEQSMKDAIEGMNGQDLDGRNITVNEAQTRGSRGGGGGGGYGSGGGYSRGGGGGGGYGGRREGGYNRNGGGGGYGGGRDRGYGDGGSRYSRGGEGGGSDGSWRN 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01805 161 MobiDBLite consensus disorder prediction 68 161 - -
Pumo11g01805 161 SMART rrm1_1 9 82 IPR000504 GO:0003723
Pumo11g01805 161 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Pumo11g01805 161 SUPERFAMILY RNA-binding domain, RBD 8 116 IPR035979 GO:0003676
Pumo11g01805 161 Gene3D - 2 123 IPR012677 -
Pumo11g01805 161 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Pumo11g01805 161 PANTHER GEO13361P1-RELATED 3 154 - -
Pumo11g01805 161 CDD RRM2_NsCP33_like 9 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01805 Pumo-Chr11 49883269 49884374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01805 10 90 Eukaryotic Initiation Factors Gene Family AT2G23350 35.802 1.16e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01805 - K13195 gmx:100796704 164.851