Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01804 ATGTTTTTTTCATGTCAAAGTTACAACCTCTACCTTCCCTGCTCCTCTGTTCCCCTGCGCAATTCAACAACATGCACCATTTTCAATTGTCAAAACCCAAACGAGCATCACTCCATTCTCCGCAAACACAATTCCAAATCCACAGCTTTTCTCCTTCACCATCTCTCCCACAAAGATGGGGTACCCATTCCCAAACCCAGCGAGCTTCAAGACCCAATGCCCCACGAAGAAAAAGTCAAGGTTTTGGAGCTTTCCCTCGTCAGGAAAAGGACCCCTCAGTTCCCTGGCTCCATCTATGCTCAATCTCCCAGCGACCCCGATGTGGGTTCTTCTCTGCCCCCTCTCCGCACTCTGTTTCAATCAAGTGCCGACACTGATGATAAAGACGAGGAGGAGGAGGAGATGATAATGCGCGCTCTCGAGATTCGAAGGAAGGTCACTGAAGAGGTTTTCAAAGAAGCCATGCGAAAGGGAAAGTTTGGAATCACTTATACTACCAATTTGGTTAGCAGGTTATCCGGTTTCATTGATTACATCATGATTGAAGCTGCTAACTTGAAGAGATTGCCCGAATATTCAAACTCCACCTTCAATTTACGCGCCAAAATTGTCATTGATGACTTGAAAGTTGTGCCGCTTGTTAGATGGTTGAAGCACAATGCACTATCATATCCTCGGGTAGCGAAGCTTATTTTGATGTCAAGAGGAAAACTTGAGGCCATAAGGAGTTTTGTCGAGTGGTTGAAGTCGGTACATGTGAAAGGAGAGTTTCTCGGTGTTGTAATGTTGAATGCTGGAGAGAATATTTTGCAGCGCAGCCATGTGGAGCTGGATGAGATTGTTCTGTATTTGGAGTCCAATGGAGTCAGGAGGGATTGGATGGGTTATGTCATTAGTCGTTGTCCTCAGTTATTGTCTTATAGCTTAGATGAAGTGAAGACTCGTGCACAGTTCTACCATGATATGGGCATAAATGAGAAGGATTTTGGCACAATGGTTTTTGATTTTCCTAAAGTTCTTGGTTACTATTCTCTGGAAGAAATGAATGCGAAGGTTAATTACTTAAAAGAATTTGGGCTTCAAAGTAAGGATGTTGGCAAATTGCTTGCATTTAGACCACAATTGATGGCGTGCAGCATTGATGAACAATGGAAACCTCTTGTTAAGTATCTGTATTATTATGGGATCACTCGAGATGGTATGCGGAGAATGCTTACCATTAAACCAATGGTCTTTTGTGCTGACTTGCAGATGACTATTGTGCCAAAGGTGCGGTTTTTTGAGGATATAGGGATTCGCAATGATGCAATTGGCAACATGCTTGTGAAGTTTCCTCCTCTACTCACTTACAGTCTGAACAAGAAGATTCGACCAGTGGTCATATTTTTGATGACCAAAGCTGGAGTCAGTGAGAAAGATATTGCCAAGGTTGTAGCTCTTGGACCTGAGCTCTTGGGATGCAATATAGCACATAAACTTGATGTAAATGTAAAATATTTTTTGTCTCTTGGCATACGTCTTCGGCAATTGGGTGAGATGATTGCTGATTTCCCAATGCTGCTCAGATACAATCCAGATGTCCTTCGTCCCAAGTATATTTATTTGCGGAAAACCATGGTCCGGCCTTTGCAAGATCTCATTGAGTTTCCAAGGTTTTTCAGCTATTCTCTTGAGGGTCGAATTATCCCAAGACACAAGGTTCTAGTGGAGAATCAGATTAATATTAAGCTGAGATACATGTTGACTAGCTCTGACGAAGAATTCAACAAAATGGTCAAGGGCATAATTAGAAAGCGCCTCAGATTTGAATCTGCTGTCACAAATGAGGATACTACTCAGCCCCAATCTGTTATTACTGGAGATATTACTACACCCCAGGCATAA 1884 0.4262 MFFSCQSYNLYLPCSSVPLRNSTTCTIFNCQNPNEHHSILRKHNSKSTAFLLHHLSHKDGVPIPKPSELQDPMPHEEKVKVLELSLVRKRTPQFPGSIYAQSPSDPDVGSSLPPLRTLFQSSADTDDKDEEEEEMIMRALEIRRKVTEEVFKEAMRKGKFGITYTTNLVSRLSGFIDYIMIEAANLKRLPEYSNSTFNLRAKIVIDDLKVVPLVRWLKHNALSYPRVAKLILMSRGKLEAIRSFVEWLKSVHVKGEFLGVVMLNAGENILQRSHVELDEIVLYLESNGVRRDWMGYVISRCPQLLSYSLDEVKTRAQFYHDMGINEKDFGTMVFDFPKVLGYYSLEEMNAKVNYLKEFGLQSKDVGKLLAFRPQLMACSIDEQWKPLVKYLYYYGITRDGMRRMLTIKPMVFCADLQMTIVPKVRFFEDIGIRNDAIGNMLVKFPPLLTYSLNKKIRPVVIFLMTKAGVSEKDIAKVVALGPELLGCNIAHKLDVNVKYFLSLGIRLRQLGEMIADFPMLLRYNPDVLRPKYIYLRKTMVRPLQDLIEFPRFFSYSLEGRIIPRHKVLVENQINIKLRYMLTSSDEEFNKMVKGIIRKRLRFESAVTNEDTTQPQSVITGDITTPQA 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01804 627 FunFam BnaA09g42960D protein 368 599 - -
Pumo11g01804 627 MobiDBLite consensus disorder prediction 95 121 - -
Pumo11g01804 627 MobiDBLite consensus disorder prediction 95 131 - -
Pumo11g01804 627 Pfam mTERF 283 588 IPR003690 GO:0003690|GO:0006355
Pumo11g01804 627 Pfam mTERF 224 357 IPR003690 GO:0003690|GO:0006355
Pumo11g01804 627 PANTHER CGI-12 PROTEIN-RELATED 277 368 IPR003690 GO:0003690|GO:0006355
Pumo11g01804 627 Gene3D Transcription termination factor 3, mitochondrial 372 596 IPR038538 -
Pumo11g01804 627 SMART mt_12 438 470 IPR003690 GO:0003690|GO:0006355
Pumo11g01804 627 SMART mt_12 330 361 IPR003690 GO:0003690|GO:0006355
Pumo11g01804 627 SMART mt_12 511 541 IPR003690 GO:0003690|GO:0006355
Pumo11g01804 627 SMART mt_12 402 433 IPR003690 GO:0003690|GO:0006355
Pumo11g01804 627 SMART mt_12 543 574 IPR003690 GO:0003690|GO:0006355
Pumo11g01804 627 SMART mt_12 366 397 IPR003690 GO:0003690|GO:0006355
Pumo11g01804 627 SMART mt_12 475 506 IPR003690 GO:0003690|GO:0006355
Pumo11g01804 627 SMART mt_12 295 325 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01804 Pumo-Chr11 49844691 49849062 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Pumo11g01804 mTERF 3.2e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01804 K15032 - gmx:100813633 856.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01804 11 49844691 49849062 Pumo11g01804 11 49844691 49849062 ECH