Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01800 ATGACAGAGTCCGGCCCAAGTGTGAGTCTGAAGCTTCTTGTGTTAGTAGCTATTTTAGTTGTCTTCGCGGTGGTGATTGTGGTTCTGGTCTTCTTCCTCTGCTTCCGCGGGAGCCGGAGCAGCAAGAAGCGGAACCTGGCGGCGAAACACAGCTCCGGGAGCATCCCTCTGGTGTCGAAGGAGATCACCATGGTCAAGGCGTCGGATCTCACCCCTGCCACGACGAGCGAGATTGGTGATGACGTGGACGGTGATCCGAAGAAGGAGGCGGAGATCAAGGTTGAAATTGGCGGGGCCCACCGCAGCTGCAGCAGCAGCAGCGAAGTGTCGGTGGAGGATCCCGATATTGGGTGGGGCCGCTGGTACACCATTAGGGAAGTGGAACTCGCCACGCGCGGGTTCTCGGAAGGGAATGTTATTGGGGAAGGAGGGTACGGCGTTGTGTACAGAGGAGTTCTGCACGATGCTTCCGTCGTTGCTGTCAAGAATCTTCTCAACAACAAGGGTCAAGCTGAGAAGGAGTTTAAGGTAGAGGTTGAAGCTATTGGAAAAGTAAGGCATAAGAATTTGGTTCGTTTGGTAGGATATTGTGCAGAAGGTGCTCGAAGGATGCTTGTTTATGAGTATGTTGACAACGGAAATTTGGAGCAGTGGCTGCATGGTGATGTAGGACCAATTAGCCCCTTGACATGGGATATTCGAATGAGAATTGCTATTGGAACTGCAAAAGGGCTAGCCTATTTGCATGAAGGCTTAGAACCCAAAGTTGTGCACCGGGATATAAAATCCAGTAACATTCTTTTGGATAAAAACTGGAATGCCAAAGTATCAGATTTTGGACTCGCCAAACTCTTAGGATCTGAGAAAACCCATGTGACTACGCGTGTAATGGGAACATTTGGATATGTTGCACCTGAGTATGCAAGCTCAGGTATGCTTAATGAACGCAGTGATGTGTATAGCTTTGGAGTTCTTCTCATGGAGATAATCACAGGAAGAAGCCCCATTGATTATTCAAGACCACCTGGAGAGATGAATTTGGTAGATTGGTTTAAGGCAATGGTAGCAAGTCGTCGCAGTGAGGATCTAGTTGATCCATTAATTGAGATTCCACCCTCTCCAAGATCTTTGAAGCGAGTTTTACTGATTTGTCTGCGCTGTATAGACTTGGATGTCGTTAAGCGACCAAAGATGGGTCAAATTGTTCACATGCTTGAGACAGATGATTTCCCCTTTCGTTCTGAGCTACGTACAGTTAGAGAGAAAGATCCTGTGCCTTCTCATGCAGATGTTTCCATTAAAGTTCCTTATCCACCACCAAAGCATGCAGAAACCGTAGAAAAATCAAGATGGAGATAA 1359 0.4761 MTESGPSVSLKLLVLVAILVVFAVVIVVLVFFLCFRGSRSSKKRNLAAKHSSGSIPLVSKEITMVKASDLTPATTSEIGDDVDGDPKKEAEIKVEIGGAHRSCSSSSEVSVEDPDIGWGRWYTIREVELATRGFSEGNVIGEGGYGVVYRGVLHDASVVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVRLVGYCAEGARRMLVYEYVDNGNLEQWLHGDVGPISPLTWDIRMRIAIGTAKGLAYLHEGLEPKVVHRDIKSSNILLDKNWNAKVSDFGLAKLLGSEKTHVTTRVMGTFGYVAPEYASSGMLNERSDVYSFGVLLMEIITGRSPIDYSRPPGEMNLVDWFKAMVASRRSEDLVDPLIEIPPSPRSLKRVLLICLRCIDLDVVKRPKMGQIVHMLETDDFPFRSELRTVREKDPVPSHADVSIKVPYPPPKHAETVEKSRWR 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01800 452 MobiDBLite consensus disorder prediction 421 452 - -
Pumo11g01800 452 PANTHER OS01G0323000 PROTEIN 6 422 - -
Pumo11g01800 452 CDD STKc_IRAK 140 406 - -
Pumo11g01800 452 FunFam Probable serine/threonine-protein kinase At1g01540 114 209 - -
Pumo11g01800 452 FunFam Putative receptor-like serine/threonine-protein kinase 210 420 - -
Pumo11g01800 452 SMART serkin_6 134 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g01800 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Pumo11g01800 452 Gene3D Phosphorylase Kinase; domain 1 100 209 - -
Pumo11g01800 452 SUPERFAMILY Protein kinase-like (PK-like) 109 407 IPR011009 -
Pumo11g01800 452 Gene3D Transferase(Phosphotransferase) domain 1 210 416 - -
Pumo11g01800 452 ProSitePatterns Protein kinases ATP-binding region signature. 140 162 IPR017441 GO:0005524
Pumo11g01800 452 Pfam Protein kinase domain 135 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g01800 452 ProSiteProfiles Protein kinase domain profile. 134 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01800 Pumo-Chr11 49794024 49798843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01800 4 408 Trihelix Transcription Factor Family AT1G70460 43.645 4.13e-97 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Pumo11g01800 Pkinase 1.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01800 - - gmx:100305442 784.637